VHC514
Library VH
(Link to library)
Clone ID VHC514
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHC514P
(Link to Original site)
Representative DNA sequence
>VHC514 (VHC514Q) /CSM/VH/VHC5-A/VHC514Q.Seq.d/
AAAACCATCATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGA
TGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTT
CAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTG
AAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATC
CAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTG
ATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATA
TTACAACATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATG
CTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTG
ATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTG
TTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTAGATTCAGTACATGGTG
CAAATTATGTTCACAAAGCAACXXXXXXXXXXGTCTTCCTTTAACTTATCCAGGTACTAC
TGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAGATGGTGTCACCACTCCACT
CTTCCAATTTGGTGATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCCGCCTGTA
GCAATTGTAAACCAATCTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCT
ATACTNTCACTGTCACTGTCACAAACAATGGTNACGTTCAAGGTANAGACTCTGTTCTCT
TATATC
sequence update 2002.10.25
Translated Amino Acid sequence
NHHFNEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGEEAEVIE
KPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQMTQLDI
TTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMINTIQTIV
IEGSPNKIPMIYGLDSVHGANYVHKA---

---LPLTYPGTTGDIGVPYYHKYSEDGVTTPLFQFGDGLSYTTFNYTNLRL*ql*tnlws
iw*lhwcfrsilyxhchchkqwxrsrxrlcsli


Translated Amino Acid sequence (All Frames)
Frame A:
ktiismni*lnsilyiyikr*kllkvyfychc***iy**vqhmevqle*allevkklksl
knhvlleikensn*sivkfiqrnn*ikkilisclpeilllii*cqkcqslkklvk*lnwi
lqh*hhqiqlqlmkqh*himlkliildhi*ihqyqvv*qvifiilivvfg*i*lilfkpl
lskvvqirfq*fmv*iqymvqimftkq---

---vfl*liqvllvisvfhittntvkmvsplhssnlvmvfliplltipisacsnckpisg
qsgnytgvlgqsytxtvtvtnngxvqgxdsvlly

Frame B:
kpsfq*ifn*iqfyiyi*kdeny*kfiftvivdsefinkfniwkfn*skhcwr*rs*sh*
kttyfwk*krtqirv*snlsketiksrky*fhvcqryfc**fnvknvnh*knwsndsigy
yninitkynyn**nnisilc*nllywiifkftsirwfsr*yssy***clvryd*yysnhc
yrr*sk*dsndlwfrfstwcklcsqsn---

---ssfnlsryyw*yrcsilpqiq*rwchhstlpiw*wsflyhf*lyqsppvaivnqslv
nlvttlvf*vnpilslslsqtmvtfkvxtlfsyi

Frame C:
NHHFNEYLIKFNFIYIYKKMKTIKSLFLLSLLIVNLLISSTYGSSIRVSIVGGEEAEVIE
KPRTFGNKRELKLEYSQIYPKKQLNQENINFMSARDTFVDNLMSKMSITEKIGQMTQLDI
TTLTSPNTITINETTLAYYAKTYYIGSYLNSPVSGGLAGDIHHINSSVWLDMINTIQTIV
IEGSPNKIPMIYGLDSVHGANYVHKA---

---LPLTYPGTTGDIGVPYYHKYSEDGVTTPLFQFGDGLSYTTFNYTNLRL*ql*tnlws
iw*lhwcfrsilyxhchchkqwxrsrxrlcsli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC514 (VHC514Q) /CSM/VH/VHC5-A/VHC514Q.Seq.d/ 1612 0.0
VHQ110 (VHQ110Q) /CSM/VH/VHQ1-A/VHQ110Q.Seq.d/ 1126 0.0
VHO350 (VHO350Q) /CSM/VH/VHO3-C/VHO350Q.Seq.d/ 1126 0.0
VHL744 (VHL744Q) /CSM/VH/VHL7-B/VHL744Q.Seq.d/ 1126 0.0
VHK201 (VHK201Q) /CSM/VH/VHK2-A/VHK201Q.Seq.d/ 1126 0.0
VHI201 (VHI201Q) /CSM/VH/VHI2-A/VHI201Q.Seq.d/ 1126 0.0
VHH715 (VHH715Q) /CSM/VH/VHH7-A/VHH715Q.Seq.d/ 1126 0.0
VHH381 (VHH381Q) /CSM/VH/VHH3-D/VHH381Q.Seq.d/ 1126 0.0
VHG420 (VHG420Q) /CSM/VH/VHG4-A/VHG420Q.Seq.d/ 1126 0.0
VHG391 (VHG391Q) /CSM/VH/VHG3-D/VHG391Q.Seq.d/ 1126 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L21014|L21014.1 Dictyostelium discoideum beta-glucosidase mRNA, complete cds. 1126 0.0 2
EH013950|EH013950.1 USDA-FP_186699 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt064_C10 5', mRNA sequence. 40 0.019 2
BG139849|BG139849.1 EST480291 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP14B10 5' sequence, mRNA sequence. 48 0.064 2
CN215175|CN215175.1 28949 Suspension culture Solanum tuberosum cDNA, mRNA sequence. 40 0.11 3
BX293980|BX293980.2 Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome. 32 0.20 13
AC163188|AC163188.2 Bos taurus clone CH240-125O20, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces. 44 0.27 3
EB503495|EB503495.1 lmos2p04e08_SP6 Striped sea bream hepatic library Lithognathus mormyrus cDNA, mRNA sequence. 36 0.30 2
BQ969550|BQ969550.1 QHB38N02.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB38N02, mRNA sequence. 48 0.44 1
AC073286|AC073286.5 Homo sapiens chromosome 3 clone RP11-298M2, *** SEQUENCING IN PROGRESS ***, 47 unordered pieces. 48 0.44 1
AC067915|AC067915.2 Homo sapiens clone RP11-131G15, WORKING DRAFT SEQUENCE, 21 unordered pieces. 48 0.44 1
dna update 2007. 4.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A49881(A49881)beta-glucosidase (EC 3.2.1.21) precursor, lysosoma... 334 2e-90
AY335818_1(AY335818|pid:none) Gossypium hirsutum beta-D-glucosid... 70 1e-10
CP000383_3519(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 68 4e-10
CP000383_2239(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 67 6e-10
CP000083_2301(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 67 8e-10
EF146977_1(EF146977|pid:none) Populus trichocarpa clone WS01225_... 66 1e-09
AL133292_9(AL133292|pid:none) Arabidopsis thaliana DNA chromosom... 65 2e-09
AJ006501_1(AJ006501|pid:none) Tropaeolum majus mRNA for beta-D-g... 65 3e-09
CP000159_2777(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 65 4e-09
AC091811_16(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ... 63 1e-08
protein update 2009. 6.28
PSORT

psg: 0.74 gvh: 0.73 alm: 0.26 top: 0.07 tms: 0.07 mit: 0.32 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.68 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VHC514 is cyt

5' end seq. ID VHC514F
5' end seq.
>VHC514F.Seq
AAAACCATCATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGA
TGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTT
CAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTG
AAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATC
CAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTG
ATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATA
TTACAACATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATG
CTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTG
ATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTG
TTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTAGATTCAGTACATGGTG
CAAATTATGTTCACAAAGCAACNNNNNNNNNN
Length of 5' end seq. 632
3' end seq. ID VHC514Z
3' end seq.
>VHC514Z.Seq
NNNNNNNNNNGTCTTCCTTTAACTTATCCAGGTACTACTGGTGATATCGGTGTTCCATAT
TACCACAAATACAGTGAAGATGGTGTCACCACTCCACTCTTCCAATTTGGTGATGGTCTT
TCTTATACCACTTTTAACTATACCAATCTCCGCCTGTAGCAATTGTAAACCAATCTCTGG
TCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCTATACTNTCACTGTCACTGTCAC
AAACAATGGTNACGTTCAAGGTANAGACTCTGTTCTCTTATATC
Length of 3' end seq. 284
Connected seq. ID VHC514P
Connected seq.
>VHC514P.Seq
AAAACCATCATTTCAATGAATATTTAATTAAATTCAATTTTATATATATATATAAAAAGA
TGAAAACTATTAAAAGTTTATTTTTACTGTCATTGTTGATAGTGAATTTATTAATAAGTT
CAACATATGGAAGTTCAATTAGAGTAAGCATTGTTGGAGGTGAAGAAGCTGAAGTCATTG
AAAAACCACGTACTTTTGGAAATAAAAGAGAACTCAAATTAGAGTATAGTCAAATTTATC
CAAAGAAACAATTAAATCAAGAAAATATTAATTTCATGTCTGCCAGAGATACTTTTGTTG
ATAATTTAATGTCAAAAATGTCAATCACTGAAAAAATTGGTCAAATGACTCAATTGGATA
TTACAACATTAACATCACCAAATACAATTACAATTAATGAAACAACATTAGCATATTATG
CTAAAACTTATTATATTGGATCATATTTAAATTCACCAGTATCAGGTGGTTTAGCAGGTG
ATATTCATCATATTAATAGTAGTGTTTGGTTAGATATGATTAATACTATTCAAACCATTG
TTATCGAAGGTAGTCCAAATAAGATTCCAATGATTTATGGTTTAGATTCAGTACATGGTG
CAAATTATGTTCACAAAGCAAC----------GTCTTCCTTTAACTTATCCAGGTACTAC
TGGTGATATCGGTGTTCCATATTACCACAAATACAGTGAAGATGGTGTCACCACTCCACT
CTTCCAATTTGGTGATGGTCTTTCTTATACCACTTTTAACTATACCAATCTCCGCCTGTA
GCAATTGTAAACCAATCTCTGGTCAATCTGGTAACTACACTGGTGTTTTAGGTCAATCCT
ATACTNTCACTGTCACTGTCACAAACAATGGTNACGTTCAAGGTANAGACTCTGTTCTCT
TATATC
Length of connected seq. 896
Full length Seq ID -
Full length Seq. -
Length of full length seq. -