>VHC435 (VHC435Q) /CSM/VH/VHC4-B/VHC435Q.Seq.d/
XXXXXXXXXXCTCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTGA
TTTCAATCCACAAAACTATGATGGTACTGGTATCAAAGGTTNTGATCGTAGCAACATGTG
TCAAATTAAAACACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACAA
TGCCTTATTTGCCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTTG
TTTAACCTATGATGAACTCATGACTAAAAACAATAACAACAAAGATGCCGTA

---HIKVNEYIHYQWTGCDFNPQNYDGTGIKGXDRSNMCQIKTLNHNYPMTDDELNDDNA
LFADMETRLRFARLGQKSCLTYDELMTKNNNNKDAV

Frame A:
---stskststfiingqvvisihktmmvlvskvxivatcvklkhsititq*ptmnstmtm
pylpiwkldldsldlakrvv*pmmns*lktittkmp


Frame B:
---phqsqrvhslsmdrl*fqstkl*wywyqrx*s*qhvsn*ntqsqlpndrr*tqr*qc
licrygn*t*ir*twpkelfnl**thd*kq*qqrcr


Frame C:
---HIKVNEYIHYQWTGCDFNPQNYDGTGIKGXDRSNMCQIKTLNHNYPMTDDELNDDNA
LFADMETRLRFARLGQKSCLTYDELMTKNNNNKDAV

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC531 (VHC531Q) /CSM/VH/VHC5-B/VHC531Q.Seq.d/                        553   e-157
VHC435 (VHC435Q) /CSM/VH/VHC4-B/VHC435Q.Seq.d/                        553   e-157
VHP893 (VHP893Q) /CSM/VH/VHP8-D/VHP893Q.Seq.d/                        551   e-156
VHN511 (VHN511Q) /CSM/VH/VHN5-A/VHN511Q.Seq.d/                        551   e-156
VHK743 (VHK743Q) /CSM/VH/VHK7-B/VHK743Q.Seq.d/                        551   e-156
VHB849 (VHB849Q) /CSM/VH/VHB8-C/VHB849Q.Seq.d/                        551   e-156
VFI267 (VFI267Q) /CSM/VF/VFI2-C/VFI267Q.Seq.d/                        551   e-156
SLH577 (SLH577Q) /CSM/SL/SLH5-D/SLH577Q.Seq.d/                        551   e-156
FC-BS21 (FC-BS21Q) /CSM/FC/FC-BS/FC-BS21Q.Seq.d/                      551   e-156
VHN383 (VHN383Q) /CSM/VH/VHN3-D/VHN383Q.Seq.d/                        549   e-156

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB120173|AB120173.1 Dictyostelium discoideum DD3-3 mRNA for hypothetical protein, complete cds.   551   e-153  1
AC131150|AC131150.8 Homo sapiens 3 BAC RP11-637J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.056  3
AC012401|AC012401.4 Homo sapiens chromosome 3 clone RP11-209H21 map 3, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38   0.52   3
AC157284|AC157284.2 Bos taurus clone CH240-50H22, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    46   0.53   1
AC156237|AC156237.2 Bos taurus clone CH240-40A2, WORKING DRAFT SEQUENCE, 16 unordered pieces.    46   0.53   1
AC152689|AC152689.3 Bos taurus clone CH240-8B21, WORKING DRAFT SEQUENCE, 27 unordered pieces.    46   0.53   1
AC166516|AC166516.3 Bos taurus clone CH240-172A2, WORKING DRAFT SEQUENCE, 16 unordered pieces.    46   0.53   1
DB168018|DB168018.1 Homo sapiens cDNA clone TKIDN2001672, 5' end, mRNA sequence.    44   2.1    1
AC125297|AC125297.3 Rattus norvegicus clone CH230-10D11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   2.1    1
AC107183|AC107183.5 Rattus norvegicus clone CH230-121F14, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   2.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120173_1(AB120173|pid:none) Dictyostelium discoideum DD3-3 mRN...   202   2e-51
CP000777_1280(CP000777|pid:none) Leptospira biflexa serovar Pato...    34   1.8
FN357550_5(FN357550|pid:none) Schistosoma mansoni genome sequenc...    33   2.4

 psg: 0.77  gvh: 0.11  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHC435 is cyt

>VHC435Z.Seq
NNNNNNNNNNCTCCACATCAAAGTCAACGAGTACATTCATTATCAATGGACAGGTTGTGA
TTTCAATCCACAAAACTATGATGGTACTGGTATCAAAGGTTNTGATCGTAGCAACATGTG
TCAAATTAAAACACTCAATCACAATTACCCAATGACCGACGATGAACTCAACGATGACAA
TGCCTTATTTGCCGATATGGAAACTAGACTTAGATTCGCTAGACTTGGCCAAAAGAGTTG
TTTAACCTATGATGAACTCATGACTAAAAACAATAACAACAAAGATGCCGTA