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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC420
Library VH
(Link to library)
Clone ID VHC420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VHC420E
(Link to Original site)
Representative DNA sequence 
>VHC420 (VHC420Q) /CSM/VH/VHC4-A/VHC420Q.Seq.d/
GTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCACTCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTC
AGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTT
AATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGC
TTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGC
TTCATTCTGGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAG
CTACCCATTCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCT
TTATTCAAGCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTT
CTTCAAAGGTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTAT
TTATGATGAAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTGGTTCGAATAAGAAAATC
CGCAAGAAAAAAAACAGGAT
sequence update 2002.10.27
Translated Amino Acid sequence 
CSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVHSASTQIAAD
KQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENP
TKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGL
IGLYRGFGVSVGGIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVS
YPFDTVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVI
YDEIQKLMGFEGGVVRIRKSARKKTG
Translated Amino Acid sequence (All Frames) 
Frame A:
vfhi*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitsslcfnsncc*
*tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rkp
nqifhw*fiiwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqerrf
nrfipwfwcicrrylclqscflwwlryc*rnfir*kqqesfilgfmgyrtschyhrwcsq
lpirycs*knddasrsc*yslfkhlgllgkdchp*rsncllqrcfikchqrfrwcfsfsy
l**npktygf*rwcgsnkkirkkknr


Frame B:
CSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVHSASTQIAAD
KQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENP
TKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRDGL
IGLYRGFGVSVGGIFVYRAAFFGGYDTAKGILLGENNKKASFWASWGIAQVVTTIAGVVS
YPFDTVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAIRGSGGALVLVI
YDEIQKLMGFEGGVVRIRKSARKKTG


Frame C:
vpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykftllqlkllli
nntkvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkktq
pnfslviyylvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstretv*
svytvvlvylsevslstellslvvtillkefy*vkttrklhsglhgvshklslpslv*sa
thsilfvee**ckpvvliffiqalgivg*rlppvkvqlpsskvlyqmpsevqvvl*f*lf
mmksknlwvlkvvwfe*enpqekkqd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC420 (VHC420Q) /CSM/VH/VHC4-A/VHC420Q.Seq.d/                       1915   0.0
VFB604 (VFB604Q) /CSM/VF/VFB6-A/VFB604Q.Seq.d/                       1867   0.0
VFL424 (VFL424Q) /CSM/VF/VFL4-A/VFL424Q.Seq.d/                       1859   0.0
FCL-AA23 (FCL-AA23Q) /CSM/FCL/FCL-AA/FCL-AA23Q.Seq.d/                1857   0.0
VFK227 (VFK227Q) /CSM/VF/VFK2-B/VFK227Q.Seq.d/                       1846   0.0
SLH708 (SLH708Q) /CSM/SL/SLH7-A/SLH708Q.Seq.d/                       1836   0.0
VFJ879 (VFJ879Q) /CSM/VF/VFJ8-D/VFJ879Q.Seq.d/                       1814   0.0
VSJ705 (VSJ705Q) /CSM/VS/VSJ7-A/VSJ705Q.Seq.d/                       1774   0.0
VFM349 (VFM349Q) /CSM/VF/VFM3-C/VFM349Q.Seq.d/                       1731   0.0
VFL711 (VFL711Q) /CSM/VF/VFL7-A/VFL711Q.Seq.d/                       1723   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1859   0.0    2
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.  1425   0.0    1
EC761664|EC761664.1 PSE00007438 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   165   e-115  4
EH016567|EH016567.1 USDA-FP_189055 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt094_D06 5', mRNA sequence.    62   1e-34  7
EH010247|EH010247.1 USDA-FP_183365 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt019_D10 5', mRNA sequence.    62   2e-34  7
EH010857|EH010857.1 USDA-FP_183914 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt026_D02 5', mRNA sequence.    62   2e-34  7
EH015330|EH015330.1 USDA-FP_187941 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt080_G06 5', mRNA sequence.    62   2e-34  7
EH012531|EH012531.1 USDA-FP_185422 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt047_H06 5', mRNA sequence.    62   3e-34  7
EH762551|EH762551.1 CNSL8553.b1_B03.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL8553, mRNA sequence.    70   2e-32  7
EH762559|EH762559.1 CNSL8561.b1_B05.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL8561, mRNA sequence.    70   2e-32  7
dna update 2007. 4.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   607   e-172
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   423   e-117
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t...   398   e-109
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran...   395   e-108
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ...   394   e-108
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit...   393   e-108
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD...   393   e-108
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   392   e-108
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra...   392   e-107
BC067329_1(BC067329|pid:none) Danio rerio solute carrier family ...   392   e-107
protein update 2009. 7.11
PSORT 

 psg: 0.81  gvh: 0.58  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHC420 is nuc
5' end seq. ID VHC420F
5' end seq. 
>VHC420F.Seq
GTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCACTCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTC
AGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTT
AATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGC
TTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAANNNNNNNNN
N
Length of 5' end seq. 661
3' end seq. ID VHC420Z
3' end seq. 
>VHC420Z.Seq
NNNNNNNNNNTCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACT
CAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCT
AAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCA
ACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTT
GGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAG
AGAGACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTC
TACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAAC
AACAAGAAAGCTTCATTCTGGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCT
GGTGTAGTCAGCTACCCATTCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGT
GCTGATATTCTTTATTCAAGCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGT
CCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTA
GTTTTAGTTATTTATGATGAAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTGGTTCGA
ATAAGAAAATCCGCAAGAAAAAAAACAGGAT
Length of 3' end seq. 751
Connected seq. ID VHC420P
Connected seq. 
>VHC420P.Seq
GTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCACTCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTC
AGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTT
AATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGC
TTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAA---------
-TCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTT
AACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAAC
CCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTA
CTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGT
TCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGT
TTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCT
GCTTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAA
GCTTCATTCTGGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTC
AGCTACCCATTCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATT
CTTTATTCAAGCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCC
TTCTTCAAAGGTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTT
ATTTATGATGAAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTGGTTCGAATAAGAAAA
TCCGCAAGAAAAAAAACAGGAT
Length of connected seq. 1392
Full length Seq ID VHC420E
Full length Seq. 
>VHC420E.Seq
GTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCACTCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGGTTC
AGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTT
AATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGC
TTTCTTTGGTGGTTACGATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGC
TTCATTCTGGGCTTCATGGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAG
CTACCCATTCGATACTGTTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCT
TTATTCAAGCACTTGGGATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTT
CTTCAAAGGTGCTTTATCAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTAT
TTATGATGAAATCCAAAAACTTATGGGTTTTGAAGGTGGTGTGGTTCGAATAAGAAAATC
CGCAAGAAAAAAAACAGGAT
Length of full length seq. 980