VHC275
Library VH
(Link to library)
Clone ID VHC275
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14773-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC275 (VHC275Q) /CSM/VH/VHC2-D/VHC275Q.Seq.d/
CAGCAACAACAACAACAGTCTGGTAAAACAAAAGATTCAAAATCTGTAAATGTTGTAGTT
TATTATTTAGATGAAACTTTCTCAAGTTATNGAATGGATCAAGAGAAAATTAAATCTGAA
GATAAATCAACCACAACTACAAATATAAAATTATTANAGTTGTCACATGATGAATCACCC
TTTAAATTACAAAAGAAATGGGCTGATAAAAATAGTAGTACTAAAAATCATAGATTCCTA
TTCAAAAGAAAGAATGAAGAATTCACAGTAAACAATTCAAAAGCAGGTAATGGTACATCG
ATCTATGATAAAGAAGCAAATATCACTCAAATCGATTTGAATGCATCTTATAAAACTCAT
AAAAAACAAAATTCTGCTGCAACCTCTGCAATGAATGAAGAGAAATTTAAACAATTGATT
ATAAACATTATGGAATTATATTCATCAAAAGTTGAACAATTATTTTTCGATCAAAATCAA
GAAGATTTCCCTGAAGATAGCGATGATGAAGAAGAGAATTTATTTGATCAAATTATTAGT
XXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
QQQQQQSGKTKDSKSVNVVVYYLDETFSSYXMDQEKIKSEDKSTTTTNIKLLXLSHDESP
FKLQKKWADKNSSTKNHRFLFKRKNEEFTVNNSKAGNGTSIYDKEANITQIDLNASYKTH
KKQNSAATSAMNEEKFKQLIINIMELYSSKVEQLFFDQNQEDFPEDSDDEEENLFDQII-
--


Translated Amino Acid sequence (All Frames)
Frame A:
QQQQQQSGKTKDSKSVNVVVYYLDETFSSYXMDQEKIKSEDKSTTTTNIKLLXLSHDESP
FKLQKKWADKNSSTKNHRFLFKRKNEEFTVNNSKAGNGTSIYDKEANITQIDLNASYKTH
KKQNSAATSAMNEEKFKQLIINIMELYSSKVEQLFFDQNQEDFPEDSDDEEENLFDQII-
--


Frame B:
snnnnslvkqkiqnl*ml*fii*mklsqvxewikrklnlkinqpqlqi*nyxschmmnhp
lnykrnglikivvlkiidsyskermknsq*tiqkqvmvhrsmikkqislksi*mhlikli
knkillqplq*mkrnlnn*l*tlwnyihqklnnyfsikikkislkiammkkriylikll-
--


Frame C:
attttvw*nkrfkickccsllfr*nflklxngsren*i*r*inhnykykiixvvt**itl
*itkemg**k**y*ks*ipiqkke*rihskqfksr*wyidl**rskyhsnrfecil*ns*
ktkfccnlcne*rei*tidykhygiifiks*tiifrsksrrfp*r*r**rrefi*sny*-
--


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC275 (VHC275Q) /CSM/VH/VHC2-D/VHC275Q.Seq.d/ 1059 0.0
VSE812 (VSE812Q) /CSM/VS/VSE8-A/VSE812Q.Seq.d/ 555 e-157
SSB785 (SSB785Q) /CSM/SS/SSB7-D/SSB785Q.Seq.d/ 40 0.035
VFN223 (VFN223Q) /CSM/VF/VFN2-A/VFN223Q.Seq.d/ 38 0.14
SSG801 (SSG801Q) /CSM/SS/SSG8-A/SSG801Q.Seq.d/ 38 0.14
AFF694 (AFF694Q) /CSM/AF/AFF6-D/AFF694Q.Seq.d/ 38 0.14
VSJ189 (VSJ189Q) /CSM/VS/VSJ1-D/VSJ189Q.Seq.d/ 36 0.54
VSJ123 (VSJ123Q) /CSM/VS/VSJ1-A/VSJ123Q.Seq.d/ 36 0.54
VSI366 (VSI366Q) /CSM/VS/VSI3-C/VSI366Q.Seq.d/ 36 0.54
VSF374 (VSF374Q) /CSM/VS/VSF3-D/VSF374Q.Seq.d/ 36 0.54

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CP000102|CP000102.1 Methanosphaera stadtmanae DSM 3091, complete genome. 38 0.005 15
CU062595|CU062595.1 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-72L24. 42 0.045 4
AC176855|AC176855.1 Strongylocentrotus purpuratus clone R3-3120N1, WORKING DRAFT SEQUENCE, 15 unordered pieces. 36 0.059 8
BX511249|BX511249.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-363B5. 50 0.066 1
AL805938|AL805938.4 Mouse DNA sequence from clone RP23-248L9 on chromosome X. 50 0.066 1
AL442203|AL442203.12 Human DNA sequence from clone RP11-12I24 on chromosome 13. 50 0.066 1
CR382282|CR382282.9 Zebrafish DNA sequence from clone CH211-208L4 in linkage group 24. 42 0.069 3
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence. 34 0.22 8
EL371567|EL371567.1 CCEL13585.b1_B13.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL13585, mRNA sequence. 48 0.26 1
EL360537|EL360537.1 CCEM5240.b1_O14.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM5240, mRNA sequence. 48 0.26 1
dna update 2007. 4.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM992695_532(FM992695|pid:none) Candida dubliniensis CD36 chromo... 41 0.018
CP001083_1175(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 40 0.052
(Q54G21) RecName: Full=FK506-binding protein 5; EC=5.2.... 38 0.15
AF148069_2(AF148069|pid:none) Entamoeba histolytica zinc finger ... 38 0.15
CP000725_107(CP000725|pid:none) Streptococcus gordonii str. Chal... 38 0.20
AL844505_54(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 36 0.57
AP008971_846(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 36 0.57
EU579524_1(EU579524|pid:none) Plasmodium berghei sporozoite and ... 35 0.98
AE014187_261(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.3
(Q6EVY7) RecName: Full=Protein ycf2; &AJ627251_66(AJ627251|pid:... 35 1.3
protein update 2009. 6.28
PSORT

psg: 0.61 gvh: 0.45 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VHC275 is cyt

5' end seq. ID VHC275F
5' end seq.
>VHC275F.Seq
CAGCAACAACAACAACAGTCTGGTAAAACAAAAGATTCAAAATCTGTAAATGTTGTAGTT
TATTATTTAGATGAAACTTTCTCAAGTTATNGAATGGATCAAGAGAAAATTAAATCTGAA
GATAAATCAACCACAACTACAAATATAAAATTATTANAGTTGTCACATGATGAATCACCC
TTTAAATTACAAAAGAAATGGGCTGATAAAAATAGTAGTACTAAAAATCATAGATTCCTA
TTCAAAAGAAAGAATGAAGAATTCACAGTAAACAATTCAAAAGCAGGTAATGGTACATCG
ATCTATGATAAAGAAGCAAATATCACTCAAATCGATTTGAATGCATCTTATAAAACTCAT
AAAAAACAAAATTCTGCTGCAACCTCTGCAATGAATGAAGAGAAATTTAAACAATTGATT
ATAAACATTATGGAATTATATTCATCAAAAGTTGAACAATTATTTTTCGATCAAAATCAA
GAAGATTTCCCTGAAGATAGCGATGATGAAGAAGAGAATTTATTTGATCAAATTATTAGT
NNNNNNNNNN
Length of 5' end seq. 550
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -