>VHC263 (VHC263Q) /CSM/VH/VHC2-C/VHC263Q.Seq.d/
XXXXXXXXXXTGCAATTATTCGCTGGTATTAAAAGTATTTGCACANAGATGGCAATGGAT
GGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTAC
TCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTGT
TCCTCCTNTGGTCAACTCTACAACTCTCAAATCACATCAGANTATTGTGTCGCCTCTGTT
GCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCTC
TTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGCCATCTNA
NTNTNTGNTATCTTTTTTGAACTCGAANAANCCCTTAGAAGTATTTTAGAAAAAAGATGG
ACTCCCAAC

---QLFAGIKSICTXMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMCS
SXGQLYNSQITSXYCVASVADAVPIMRMYFHTGILDYILFKSWVPRTDRQFAGSWFAIXX
XXIFFELEXXLRSILEKRWTPN

Frame A:
---aiirwy*kylhxdgngwl*emfrkftnyhl*cfaslllplygya*yvtmcqldqdvf
llwstlqlsnhirxlcrlcc*rrsnhenvlshwylglypl*ilgtkn*psicwfmvchlx
xxylf*trxxp*kyfrkkmdsq


Frame B:
---QLFAGIKSICTXMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMCS
SXGQLYNSQITSXYCVASVADAVPIMRMYFHTGILDYILFKSWVPRTDRQFAGSWFAIXX
XXIFFELEXXLRSILEKRWTPN


Frame C:
---nyslvlkvfaxrwqwmvvrnvqeihqlppvmfcqftppfvwlclichnvpigprcvp
pxvnsttlkshqxivspllltpfqs*ectftlvswtisslnlgyqeltvnllvhglpsxx
xxsflnsxxplevf*kkdglp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC263 (VHC263Q) /CSM/VH/VHC2-C/VHC263Q.Seq.d/                        771   0.0
VHP801 (VHP801Q) /CSM/VH/VHP8-A/VHP801Q.Seq.d/                        765   0.0
VHK521 (VHK521Q) /CSM/VH/VHK5-A/VHK521Q.Seq.d/                        765   0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/                        755   0.0
VFI662 (VFI662Q) /CSM/VF/VFI6-C/VFI662Q.Seq.d/                        755   0.0
VFG734 (VFG734Q) /CSM/VF/VFG7-B/VFG734Q.Seq.d/                        755   0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/                        755   0.0
VFE385 (VFE385Q) /CSM/VF/VFE3-D/VFE385Q.Seq.d/                        755   0.0
VFC744 (VFC744Q) /CSM/VF/VFC7-B/VFC744Q.Seq.d/                        755   0.0
VFB866 (VFB866Q) /CSM/VF/VFB8-C/VFB866Q.Seq.d/                        755   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein.   755   0.0    1
EJ629022|EJ629022.1 1092963285927 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061002182602 5', genomic survey sequence.    46   0.80   1
EJ628934|EJ628934.1 1092963282855 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061002182602 3', genomic survey sequence.    46   0.80   1
AC139711|AC139711.4 Mus musculus BAC clone RP23-362F21 from chromosome 19, complete sequence.    34   8.3    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb...   273   1e-72
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem...    58   1e-07
DQ459355_1(DQ459355|pid:none) Drosophila melanogaster Ctr1B (Ctr...    34   1.8
T32929(T32929)hypothetical protein K12C11.3 - Caenorhabditis ele...    32   5.3
BX901933_2(BX901933|pid:none) Zebrafish DNA sequence from clone ...    32   9.0
Z68217_7(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c...    32   9.0

 psg: 0.91  gvh: 0.49  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial

>> prediction for VHC263 is cyt

>VHC263Z.Seq
NNNNNNNNNNTGCAATTATTCGCTGGTATTAAAAGTATTTGCACANAGATGGCAATGGAT
GGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTTAC
TCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGTGT
TCCTCCTNTGGTCAACTCTACAACTCTCAAATCACATCAGANTATTGTGTCGCCTCTGTT
GCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCCTC
TTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGCCATCTNA
NTNTNTGNTATCTTTTTTGAACTCGAANAANCCCTTAGAAGTATTTTAGAAAAAAGATGG
ACTCCCAAC