VHC228 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHC228
Library	VH (Link to library)
Clone ID	VHC228 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15666-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHC2-B/VHC228Q.Seq.d/
Representative seq. ID	VHC228P (Link to Original site)
Representative DNA sequence	>VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/ AGAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAA AAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATA ATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGA AATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACT CCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATAT GGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACA GATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATC ATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTAT GAACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGT CAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCA TCATCATCATCATTATTTCAACAAAGCGTTCGTGGTGXXXXXXXXXXTGCTGATAATGAT ATTAAAATCCAAGAAATTTCTGAACTTGTAGTATCATCTCCAAATGGTTTTAAATTTGCT CATGAATTATCTTTATTTTCTGAATTTATAAATAAACAACAATGGAGAACTATTATAGAA CAATCAGCATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATT ATGATTGAAGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTA ACCTCAATTTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGAT TATCAAGGTAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAA TTATTGAAACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATT CAAAAGATTGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTA CAAGATTATCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCA TACGTTGACATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAAT CGTAGTGCCTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAA TGTATTGCTTTGTTTGCTGGTAAAATAGATTTCCCAATGTCTGGTAATATCTTACCTCGT TTAA
sequence update	2002.10.25
Translated Amino Acid sequence	rkccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG QKHIKVLPSVGGASASNQSSSSSSLFQQSVRG--- ---ADNDIKIQEISELVVSSPNGFKFAHELSLFSEFINKQQWRTIIEQSALELENKNEYQ SAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFGKQLFNDYQGRLKTTSTART SYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISESEIDSKVQDYRFLSPHITRN FSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQDLQSRTQCIALFAGKIDFPM SGNILPRL
Translated Amino Acid sequence (All Frames)	Frame A: rkccstinptfminkKRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIER NLQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFT DVQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILG QKHIKVLPSVGGASASNQSSSSSSLFQQSVRG--- ---c*ynprnftcsiiskwficsiififiykttmenyyrtisigireeis kcnildydrvsksfrdl*nigiinlnfkkrsiisiwaiiqlsriknnlnskn qlfslaiietlrflpiqqrkvsrgnskdkfgnltnlirnrfkgtrlsfpfttyhk flfyhssirhhctipftklriysclicwstnhsrssinsmycfvcwnrfpn vwyltsf Frame B: esvvqlltqhl*inkkggkkkmrkwilmiyqinpiksieyhhfqvqlgyhhstlke iykrlvihqnnmilhqklhfqihwnqmyfkilklienmdiqkfqriylisihhhsq mfnqyqqilmvirfnlrisfiqfvtfkkrhqksfnpimnkhqfmigieiknirrfv knilkfyqvlvvlalvinhhhhhhyfnkafvv--- ---ADNDIKIQEISELVVSSPNGFKFAHELSLFSEFINKQQWRTIIEQSALELENKNEYQ SAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFGKQLFNDYQGRLKTTSTART SYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISESEIDSKVQDYRFLSPHITRN FSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQDLQSRTQCIALFAGKIDFPM SGNILPRL Frame C: kvlfnypniydkikkegkkneckgngf*fikiqsnnqniiifksnwviiiqhkk strdwyiktiefnfiknsifksigtkcisrfnkiwirsksfskefiyqyiiihr csistnrywlfkgsieyhfeynlhskkdikrvsipltninslerkifrgdfrs ktysftkcwwcrsiiiiiiiistkrsw--- ---limilkskkflnlyhlqmvlnllmnylyflnlinnngellnnqhwnrirmnik vqlnfgllksiqefrfiiveyryypqfqvkeinyinlvsnysmiikvdkqpqqqep viplsnynfaisltyttkksikrqfkrlkiwksyqslnqksiqrykiivsfhhislei sllsfkhtltsllnntiyitltnllivvpyllvvnkpfkifnlelnvllcllvkisqc lvisylv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/ 1469 0.0 VHA241 (VHA241Q) /CSM/VH/VHA2-B/VHA241Q.Seq.d/ 1461 0.0 SHC447 (SHC447Q) /CSM/SH/SHC4-B/SHC447Q.Seq.d/ 1461 0.0 AHD783 (AHD783Q) /CSM/AH/AHD7-D/AHD783Q.Seq.d/ 1461 0.0 AHD282 (AHD282Q) /CSM/AH/AHD2-D/AHD282Q.Seq.d/ 1461 0.0 AHF539 (AHF539Q) /CSM/AH/AHF5-B/AHF539Q.Seq.d/ 1453 0.0 AHD140 (AHD140Q) /CSM/AH/AHD1-B/AHD140Q.Seq.d/ 1453 0.0 AHN719 (AHN719Q) /CSM/AH/AHN7-A/AHN719Q.Seq.d/ 1447 0.0 VHP160 (VHP160Q) /CSM/VH/VHP1-C/VHP160Q.Seq.d/ 1445 0.0 AHL304 (AHL304Q) /CSM/AH/AHL3-A/AHL304Q.Seq.d/ 1445 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 0.027 12 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 0.052 12 AG595882\|AG595882.1 Mus musculus molossinus DNA, clone:MSMg01-526D20.T7, genomic survey sequence. 50 0.17 1 CU210913\|CU210913.6 Mouse DNA sequence from clone DN-38P14 on chromosome 4. 50 0.17 1 AL669834\|AL669834.10 Mouse DNA sequence from clone RP23-114O4 on chromosome 4. 50 0.17 1 EK014750\|EK014750.1 1092955225619 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001947080 5', genomic survey sequence. 44 0.23 2 CR382399\|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 32 0.28 12 CT033809\|CT033809.16 Zebrafish DNA sequence from clone CH211-134F5 in linkage group 22. 38 0.28 8 AF409138\|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome. 34 0.41 7 CE717940\|CE717940.1 tigr-gss-dog-17000314594808 Dog Library Canis familiaris genomic, genomic survey sequence. 36 0.49 2
dna update	2007. 4.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 84 2e-14 U63919_1(U63919\|pid:none) Xenopus laevis An4a mRNA, complete cds. 84 2e-14 BX470170_7(BX470170\|pid:none) Zebrafish DNA sequence from clone ... 80 1e-13 (Q7ZU29) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 80 1e-13 DQ156149_2(DQ156149\|pid:none) Salmo salar clone BAC S0085O16, pa... 79 3e-13 U77595_1(U77595\|pid:none) Danio rerio dye mRNA, complete cds. 79 4e-13 BT045693_1(BT045693\|pid:none) Salmo salar clone ssal-rgf-528-376... 79 5e-13 (A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 72 5e-11 (Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 72 6e-11 CR859933_1(CR859933\|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 72 6e-11
protein update	2009. 6.28
PSORT	psg: 0.57 gvh: 0.44 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: cytoplasmic 32.0 %: mitochondrial 28.0 %: nuclear >> prediction for VHC228 is cyt
5' end seq. ID	VHC228F
5' end seq.	>VHC228F.Seq AGAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAA AAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATA ATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGA AATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACT CCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATAT GGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACA GATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATC ATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTAT GAACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGT CAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCA TCATCATCATCATTATTTCAACAAAGCGTTCGTGGTGNNNNNNNNNN
Length of 5' end seq.	647
3' end seq. ID	VHC228Z
3' end seq.	>VHC228Z.Seq NNNNNNNNNNTGCTGATAATGATATTAAAATCCAAGAAATTTCTGAACTTGTAGTATCAT CTCCAAATGGTTTTAAATTTGCTCATGAATTATCTTTATTTTCTGAATTTATAAATAAAC AACAATGGAGAACTATTATAGAACAATCAGCATTGGAATTAGAGAATAAGAATGAATATC AAAGTGCAATTGAATTTTGGATTATGATTGAAGAGTATCCAAGAGTTTTAGAGATTTATA ATAGTAGAATATCGGTATTATTAACCTCAATTTCAAGTGAAAGAGATCAATTATATCAAT TTGGTAAGCAATTATTCAATGATTATCAAGGTAGATTAAAAACAACCTCAACAGCAAGAA CCAGTTATTTAGCCTTTGAGCAATTATTGAAACTTTGCGATTTCTTTGACCTATACAACA AAGAAAAGTATCAAGAGGCAATTCAAAAGATTGAAAATTTGGAAATCTTACCAATCTCTG AATCAGAAATCGATTCAAAGGTACAAGATTATCGTTTCCTTTCACCACATATCACTAGAA ATTTCTCTTCTATCATTCAAGCATACGTTGACATCATTGTTAAACAATACCATTTACTAA ATAACTTTGACGAATTTACTAATCGTAGTGCCTTATTTGCTGGTCGTAAACAAACCATTC AAGATCTTCAATCTAGAACTCAATGTATTGCTTTGTTTGCTGGTAAAATAGATTTCCCAA TGTCTGGTAATATCTTACCTCGTTTAA
Length of 3' end seq.	747
Connected seq. ID	VHC228P
Connected seq.	>VHC228P.Seq AGAAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAA AAAAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATA ATCAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGA AATCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACT CCATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATAT GGATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACA GATGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATC ATTTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTAT GAACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGT CAAAAACATATTAAAGTTTTACCAAGTGTTGGTGGTGCTAGCGCTAGTAATCAATCATCA TCATCATCATCATTATTTCAACAAAGCGTTCGTGGTG----------TGCTGATAATGAT ATTAAAATCCAAGAAATTTCTGAACTTGTAGTATCATCTCCAAATGGTTTTAAATTTGCT CATGAATTATCTTTATTTTCTGAATTTATAAATAAACAACAATGGAGAACTATTATAGAA CAATCAGCATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATT ATGATTGAAGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTA ACCTCAATTTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGAT TATCAAGGTAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAA TTATTGAAACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATT CAAAAGATTGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTA CAAGATTATCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCA TACGTTGACATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAAT CGTAGTGCCTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAA TGTATTGCTTTGTTTGCTGGTAAAATAGATTTCCCAATGTCTGGTAATATCTTACCTCGT TTAA
Length of connected seq.	1374
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas