VHC220
Library VH
(Link to library)
Clone ID VHC220
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11403-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHC220 (VHC220Q) /CSM/VH/VHC2-A/VHC220Q.Seq.d/
XXXXXXXXXXTGTGAATATTTAATTAGATTCCATGAACAAAGAGGTGATAAGATCATTGT
TTTCTCTGATAATGTTTATGCACTTCAAAAGTATGCCAAAGGATTGGGTAGATATTTCAT
TTATGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCC
AACCGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGC
AACCGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTT
AGGTCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTC
TTTGGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAAT
TGATCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAA
CTTAAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGG
TGAAGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGC
AAAGAAATCAAAATCTTCTGCTCCAACAGTTTCAAGAACTACTGGTGGTTCAACTAGAGC
ATTATCTGGTGGTAATGATATGAACTATATGGAATATCAAGCTCCTGCAACTTATAAAAG
TATTCCAACTCAACATGCATTATTTAAACAACGGCTAAACAATAAACAATAAAAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---EYLIRFHEQRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPT
VRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSL
VSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGE
DSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPATYKSI
PTQHALFKQRLNNKQ*ki


Translated Amino Acid sequence (All Frames)
Frame A:
---vni*ldsmnkevirslfslimfmhfksmpkdwvdisfmdqhqamke*vfsrnfnmiq
p*epfsfqrlviplsifqrqplsfkfhhimvhvvkrhnv*vvffvqnqnlmvftmlsfil
wfqkilkkcitvqrdnsf*likvivlrsfqsylvlikk*t*nilqnkinsiywlkywvkv
kivvkmkf*kkismillvvqrnqnlllqqfqellvvqlehylvvmi*tiwnikllqlikv
fqlnmhylnng*tinnkk


Frame B:
---*ifn*ip*tkr**dhcfl**clctskvcqrig*ifhlwtnirp*kneysleist*sn
rknhfhfkgw*ylyrysrgnryhssfitlwftssrgttfrsysssktki*wslqcfllff
gfkrysrnvlqykettvfn*srl*f*ghfrvtwy*srsklkiffktrstrsigssig*r*
r*w*k*nfrrrfr*yyswckeikifcsnsfknywwfn*siiww**yelygissscnl*ky
snstcii*ttakq*tikn


Frame C:
---EYLIRFHEQRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPT
VRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSL
VSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQVLGEGE
DSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPATYKSI
PTQHALFKQRLNNKQ*ki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC220 (VHC220Q) /CSM/VH/VHC2-A/VHC220Q.Seq.d/ 1522 0.0
CHG470 (CHG470Q) /CSM/CH/CHG4-C/CHG470Q.Seq.d/ 1485 0.0
CHS338 (CHS338Q) /CSM/CH/CHS3-B/CHS338Q.Seq.d/ 1481 0.0
CHL631 (CHL631Q) /CSM/CH/CHL6-B/CHL631Q.Seq.d/ 1475 0.0
CHQ732 (CHQ732Q) /CSM/CH/CHQ7-B/CHQ732Q.Seq.d/ 1459 0.0
CHF638 (CHF638Q) /CSM/CH/CHF6-B/CHF638Q.Seq.d/ 1459 0.0
CHI364 (CHI364Q) /CSM/CH/CHI3-C/CHI364Q.Seq.d/ 1409 0.0
AHB279 (AHB279Q) /CSM/AH/AHB2-D/AHB279Q.Seq.d/ 1403 0.0
VFA773 (VFA773Q) /CSM/VF/VFA7-D/VFA773Q.Seq.d/ 1400 0.0
CHM270 (CHM270Q) /CSM/CH/CHM2-C/CHM270Q.Seq.d/ 1366 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U77065|U77065.1 Dictyostelium discoideum DNA helicase homolog (repB) gene, complete cds. 1465 0.0 2
EL422772|EL422772.1 CHCM2349.b1_I11.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM2349, mRNA sequence. 76 5e-24 3
CO095882|CO095882.1 GR__Ea18L20.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18L20 3', mRNA sequence. 80 2e-20 3
CO117140|CO117140.1 GR__Eb019M05.r GR__Eb Gossypium raimondii cDNA clone GR__Eb019M05 3', mRNA sequence. 80 2e-20 3
DY888189|DY888189.1 CeleSEQ3680 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ3680, mRNA sequence. 62 3e-19 3
EH756438|EH756438.1 CNSL15450.b1_C23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL15450, mRNA sequence. 68 2e-15 2
EH778383|EH778383.1 CNSS17210.b1_D08.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS17210, mRNA sequence. 68 3e-15 2
EH787453|EH787453.1 CNSS27480.b1_O06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS27480, mRNA sequence. 68 3e-15 2
CR382137|CR382137.1 Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii. 62 3e-15 3
AR528144|AR528144.1 Sequence 447 from patent US 6723837. 68 6e-15 3
dna update 2007. 4.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O00835) RecName: Full=TFIIH basal transcription factor complex ... 499 e-140
(O13768) RecName: Full=Probable DNA repair helicase ercc3; ... 273 3e-72
CR382137_378(CR382137|pid:none) Debaryomyces hansenii strain CBS... 273 4e-72
FM992695_260(FM992695|pid:none) Candida dubliniensis CD36 chromo... 266 4e-70
L01414_1(L01414|pid:none) Saccharomyces cerevisiae DNA helicase ... 266 7e-70
CU928179_600(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 263 4e-69
EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13 ... 256 6e-67
AM920436_1609(AM920436|pid:none) Penicillium chrysogenum Wiscons... 255 1e-66
AP007162_442(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 251 1e-65
AM270206_31(AM270206|pid:none) Aspergillus niger contig An09c017... 251 2e-65
protein update 2009. 6.28
PSORT

psg: 0.71 gvh: 0.37 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for VHC220 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHC220Z
3' end seq.
>VHC220Z.Seq
NNNNNNNNNNTGTGAATATTTAATTAGATTCCATGAACAAAGAGGTGATAAGATCATTGT
TTTCTCTGATAATGTTTATGCACTTCAAAAGTATGCCAAAGGATTGGGTAGATATTTCAT
TTATGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCC
AACCGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGC
AACCGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTT
AGGTCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTC
TTTGGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAAT
TGATCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAA
CTTAAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGG
TGAAGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGC
AAAGAAATCAAAATCTTCTGCTCCAACAGTTTCAAGAACTACTGGTGGTTCAACTAGAGC
ATTATCTGGTGGTAATGATATGAACTATATGGAATATCAAGCTCCTGCAACTTATAAAAG
TATTCCAACTCAACATGCATTATTTAAACAACGGCTAAACAATAAACAATAAAAAATA
Length of 3' end seq. 778
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -