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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC159
Library VH
(Link to library)
Clone ID VHC159
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID VHC159P
(Link to Original site)
Representative DNA sequence 
>VHC159 (VHC159Q) /CSM/VH/VHC1-C/VHC159Q.Seq.d/
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXTCTGGTCAAGGTGCTGTTC
AAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCAT
TGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAG
AGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTG
AAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATA
CTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTAT
TTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTG
GTTTTGGTGCTTGGT
sequence update 2002.10.25
Translated Amino Acid sequence 
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---SGQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTG
HHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVE
RGNPFLAFVGFGAW
Translated Amino Acid sequence (All Frames) 
Frame A:
isknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---SGQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTG
HHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVE
RGNPFLAFVGFGAW

Frame B:
fqkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---lvkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlv
itvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksn
vvihswlslvlvlg

Frame C:
fkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---wsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhws
sr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrt
w*silgfrwfwcl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                        781   0.0
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/                        781   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        781   0.0
VHC159 (VHC159Q) /CSM/VH/VHC1-C/VHC159Q.Seq.d/                        781   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                        781   0.0
SHK862 (SHK862Q) /CSM/SH/SHK8-C/SHK862Q.Seq.d/                        781   0.0
SHK817 (SHK817Q) /CSM/SH/SHK8-A/SHK817Q.Seq.d/                        781   0.0
SHK285 (SHK285Q) /CSM/SH/SHK2-D/SHK285Q.Seq.d/                        781   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                        781   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                        781   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   781   0.0    1
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   7e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   7e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   7e-11  1
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
DT457611|DT457611.1 GH_ON34M24.f GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 5', mRNA sequence.    72   2e-08  1
CO127208|CO127208.1 GR__Eb11K12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11K12 3', mRNA sequence.    72   2e-08  1
CO124018|CO124018.1 GR__Eb06J21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb06J21 3', mRNA sequence.    72   2e-08  1
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    72   2e-08  1
dna update 2007. 4.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   267   1e-70
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   267   1e-70
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   133   3e-30
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   130   2e-29
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   130   2e-29
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   130   2e-29
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   130   3e-29
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   128   9e-29
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   128   9e-29
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   121   1e-26
protein update 2009. 6.28
PSORT 

 psg: 0.85  gvh: 0.62  alm: 0.18  top: 0.50  tms: 0.07  mit: 0.34  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.18  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHC159 is end
5' end seq. ID VHC159F
5' end seq. 
>VHC159F.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 161
3' end seq. ID VHC159Z
3' end seq. 
>VHC159Z.Seq
NNNNNNNNNNTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTC
CATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGT
CGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGG
TCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCAT
CGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTC
ATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGA
ACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGT
Length of 3' end seq. 404
Connected seq. ID VHC159P
Connected seq. 
>VHC159P.Seq
ATTTCAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAA
AATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAAC
ACTCTATCATTTAATTTTAATAAAAAAAAAA----------TCTGGTCAAGGTGCTGTTC
AAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCAT
TGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAG
AGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTG
AAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATA
CTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTAT
TTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTG
GTTTTGGTGCTTGGT
Length of connected seq. 545
Full length Seq ID -
Full length Seq. -
Length of full length seq. -