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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHC147
Library VH
(Link to library)
Clone ID VHC147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12408-1
Original site URL
Representative seq. ID VHC147P
(Link to Original site)
Representative DNA sequence 
>VHC147 (VHC147Q) /CSM/VH/VHC1-B/VHC147Q.Seq.d/
AAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATAA
AACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAAXXXXXXXXXX
TCACCAATTAGAGATATTAATGAAGGTATTTTTATAACATTAGCACAAACTATGAGTATG
ATGGGATATTTCAATAATGTTAGTAATGATCCCTCAAAGAAAACTTTGAAATATAGTCAA
TTTTTAGAAAATGTTTCAAATACTAAATTACAAGAACCAACTTTACTTTTAATTGAATTA
TTAAGATCTGGTTCTTTTACTTTTGAAAGATTAAATTTTATTCCAAAACCAACTTTTGAT
GGTCCACCTTCAAAACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTTAATTCCAAGT
CAATTGGATAATACACCATGGGGTGGACCAATTGATCATGATTTAATGGGTTTCCATGAA
ATTACACGTACTCTTTACAAATCATTAAGAAATCTTATTGAAATGACTGCATTATCTCAC
TTTTTAACTCATAGAATTGTATTACCACCACCAGAGTACTTTACATTTTCAACAAGATTA
CCATTTTTCCTTCAACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCTTTTATTAGAG
AATTTATCATTGGAACAATTGGAAGAGATTTTCCCAAATTTCACAAATATCAAAGAGGAT
TTGGCTTTAGCTTCTCAATTTTGGGATACTGCATTTAAGATTGTCACCACCATTCACAAC
GAAGGTAACATTATTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGACAAAGAAGGA
GAGAAATAANAAAAACTTTAATTAGGNAAAAAATTCAATCAAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
kfif*kiy*kgyffq*LSNKTIFIFFYIKIIFFKKK---

---SPIRDINEGIFITLAQTMSMMGYFNNVSNDPSKKTLKYSQFLENVSNTKLQEPTLLL
IELLRSGSFTFERLNFIPKPTFDGPPSKPSVFIISRVLSLIPSQLDNTPWGGPIDHDLMG
FHEITRTLYKSLRNLIEMTALSHFLTHRIVLPPPEYFTFSTRLPFFLQPSSSMGLLVKGL
LLENLSLEQLEEIFPNFTNIKEDLALASQFWDTAFKIVTTIHNEGNIISKTIYEAFVEAD
KEGEK*xkl*lgkkfnqn
Translated Amino Acid sequence (All Frames) 
Frame A:
kiyflknilkriffsviv**nyfyiflyknnff*kk---

---SPIRDINEGIFITLAQTMSMMGYFNNVSNDPSKKTLKYSQFLENVSNTKLQEPTLLL
IELLRSGSFTFERLNFIPKPTFDGPPSKPSVFIISRVLSLIPSQLDNTPWGGPIDHDLMG
FHEITRTLYKSLRNLIEMTALSHFLTHRIVLPPPEYFTFSTRLPFFLQPSSSMGLLVKGL
LLENLSLEQLEEIFPNFTNIKEDLALASQFWDTAFKIVTTIHNEGNIISKTIYEAFVEAD
KEGEK*xkl*lgkkfnqn

Frame B:
kfif*kiy*kgyffq*LSNKTIFIFFYIKIIFFKKK---

---hqleilmkvfl*h*hkl*v*wdisimlvmipqrkl*nivnf*kmfqilnyknqlyf*
lny*dlvllllkd*ilfqnqllmvhlqnhlfs*slef*v*fqvnwiihhgvdqlimi*wv
smklhvlftnh*eillk*lhyltf*lielyyhhqstlhfqqdyhfsfnqvqvwvf*lkvf
y*riyhwnnwkrfsqisqiskriwl*llnfgilhlrlsppfttkvtllakqfmklllkqt
kkernxknfn*xknsiki

Frame C:
nlffkkyikkdiffsncliklflyffi*k*fflkkk---

---tn*ry**ryfynistnyeydgifq*c***slkenfei*sifrkcfky*itrtnftfn
*iikiwffyf*kikfysktnf*wstfkticfhnlssfkfnsksig*ytmgwtn*s*fngf
p*nytyslqiikksy*ndciislfns*ncitttrvlyifnkitifpstkfkygsfs*rsf
irefiigtigrdfpkfhkyqrgfgfsfsilgyci*dchhhsqrr*hy*qnnl*sfc*srq
rrreixktlirxkiqsk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO347 (VHO347Q) /CSM/VH/VHO3-B/VHO347Q.Seq.d/                       1507   0.0
VHC147 (VHC147Q) /CSM/VH/VHC1-B/VHC147Q.Seq.d/                       1507   0.0
VHQ116 (VHQ116Q) /CSM/VH/VHQ1-A/VHQ116Q.Seq.d/                       1499   0.0
VHD744 (VHD744Q) /CSM/VH/VHD7-B/VHD744Q.Seq.d/                       1495   0.0
VHO342 (VHO342Q) /CSM/VH/VHO3-B/VHO342Q.Seq.d/                       1140   0.0
VHE349 (VHE349Q) /CSM/VH/VHE3-C/VHE349Q.Seq.d/                        995   0.0
VHP380 (VHP380Q) /CSM/VH/VHP3-D/VHP380Q.Seq.d/                        920   0.0
VHE391 (VHE391Q) /CSM/VH/VHE3-D/VHE391Q.Seq.d/                        733   0.0
VSJ729 (VSJ729Q) /CSM/VS/VSJ7-B/VSJ729Q.Seq.d/                         38   0.22
VSD259 (VSD259Q) /CSM/VS/VSD2-C/VSD259Q.Seq.d/                         38   0.22
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EJ559286|EJ559286.1 1092959534696 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061001909693 3', genomic survey sequence.    40   0.30   2
ER584629|ER584629.1 1093015861854 Global-Ocean-Sampling_GS-36-01-01-2P2KB marine metagenome genomic clone 1061002595034 5', genomic survey sequence.    40   0.36   2
EJ559634|EJ559634.1 1092959537384 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061001909693 5', genomic survey sequence.    40   0.37   2
ER329471|ER329471.1 1092344243240 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061001486131 5', genomic survey sequence.    40   0.40   2
EJ694627|EJ694627.1 1092956014420 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001791912 3', genomic survey sequence.    48   0.43   1
EJ673432|EJ673432.1 1092955067314 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001791912 5', genomic survey sequence.    48   0.43   1
CU326388|CU326388.1 Medicago truncatula chromosome 5 clone mte1-64l12, WORKING DRAFT  SEQUENCE, 2 ordered pieces.    40   0.75   4
EK270853|EK270853.1 1095462256284 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005807641 5', genomic survey sequence.    38   1.3    2
EK229955|EK229955.1 1095460175434 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005807641 3', genomic survey sequence.    38   1.4    2
DN126565|DN126565.1 1140506 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.    46   1.7    1
dna update 2007. 4.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007863_4(AC007863|pid:none) Trypanosoma brucei chromosome 6 cl...    53   2e-05
AM502248_392(AM502248|pid:none) Leishmania infantum chromosome 30.     48   5e-04
CT005267_366(CT005267|pid:none) Leishmania major strain Friedlin...    47   7e-04
AE017350_227(AE017350|pid:none) Cryptococcus neoformans var. neo...    47   0.001
CR940353_141(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.009
protein update 2009. 2.24
PSORT 

 psg: 0.97  gvh: 0.27  alm: 0.36  top: 0.67  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHC147 is mit
5' end seq. ID VHC147F
5' end seq. 
>VHC147F.Seq
AAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATAA
AACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 120
3' end seq. ID VHC147Z
3' end seq. 
>VHC147Z.Seq
NNNNNNNNNNTCACCAATTAGAGATATTAATGAAGGTATTTTTATAACATTAGCACAAAC
TATGAGTATGATGGGATATTTCAATAATGTTAGTAATGATCCCTCAAAGAAAACTTTGAA
ATATAGTCAATTTTTAGAAAATGTTTCAAATACTAAATTACAAGAACCAACTTTACTTTT
AATTGAATTATTAAGATCTGGTTCTTTTACTTTTGAAAGATTAAATTTTATTCCAAAACC
AACTTTTGATGGTCCACCTTCAAAACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTT
AATTCCAAGTCAATTGGATAATACACCATGGGGTGGACCAATTGATCATGATTTAATGGG
TTTCCATGAAATTACACGTACTCTTTACAAATCATTAAGAAATCTTATTGAAATGACTGC
ATTATCTCACTTTTTAACTCATAGAATTGTATTACCACCACCAGAGTACTTTACATTTTC
AACAAGATTACCATTTTTCCTTCAACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCT
TTTATTAGAGAATTTATCATTGGAACAATTGGAAGAGATTTTCCCAAATTTCACAAATAT
CAAAGAGGATTTGGCTTTAGCTTCTCAATTTTGGGATACTGCATTTAAGATTGTCACCAC
CATTCACAACGAAGGTAACATTATTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGA
CAAAGAAGGAGAGAAATAANAAAAACTTTAATTAGGNAAAAAATTCAATCAAAATT
Length of 3' end seq. 776
Connected seq. ID VHC147P
Connected seq. 
>VHC147P.Seq
AAAATTTATTTTTTAAAAAATATATTAAAAAGGATATTTTTTTCAGTAATTGTCTAATAA
AACTATTTTTATATTTTTTTATATAAAAATAATTTTTTTTAAAAAAAAAA----------
TCACCAATTAGAGATATTAATGAAGGTATTTTTATAACATTAGCACAAACTATGAGTATG
ATGGGATATTTCAATAATGTTAGTAATGATCCCTCAAAGAAAACTTTGAAATATAGTCAA
TTTTTAGAAAATGTTTCAAATACTAAATTACAAGAACCAACTTTACTTTTAATTGAATTA
TTAAGATCTGGTTCTTTTACTTTTGAAAGATTAAATTTTATTCCAAAACCAACTTTTGAT
GGTCCACCTTCAAAACCATCTGTTTTCATAATCTCTCGAGTTTTAAGTTTAATTCCAAGT
CAATTGGATAATACACCATGGGGTGGACCAATTGATCATGATTTAATGGGTTTCCATGAA
ATTACACGTACTCTTTACAAATCATTAAGAAATCTTATTGAAATGACTGCATTATCTCAC
TTTTTAACTCATAGAATTGTATTACCACCACCAGAGTACTTTACATTTTCAACAAGATTA
CCATTTTTCCTTCAACCAAGTTCAAGTATGGGTCTTTTAGTTAAAGGTCTTTTATTAGAG
AATTTATCATTGGAACAATTGGAAGAGATTTTCCCAAATTTCACAAATATCAAAGAGGAT
TTGGCTTTAGCTTCTCAATTTTGGGATACTGCATTTAAGATTGTCACCACCATTCACAAC
GAAGGTAACATTATTAGCAAAACAATTTATGAAGCTTTTGTTGAAGCAGACAAAGAAGGA
GAGAAATAANAAAAACTTTAATTAGGNAAAAAATTCAATCAAAATT
Length of connected seq. 876
Full length Seq ID -
Full length Seq. -
Length of full length seq. -