>VHC139 (VHC139Q) /CSM/VH/VHC1-B/VHC139Q.Seq.d/
CCTTTTTCTATCATTNATTATTNATTTTTTNAATTNATTTTTTTTCTATTTTTTTTTTTN
ATTTNCCCNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTNNTTTTTTNNAAAA
AANGGGGGGNTNNNNAAAAAAXXXXXXXXXXACCAATTTCACATCAAAACTCATCCAATA
GTTTCAATAAATCACCAAGAAAATTGGATGGTGAAAATGGTGAATTAGTATGTGCAAGAT
GTGGTGGAGGCATTGAAGGAAATCATTTCAAAGCATTAGATCAAGCATGGCATATTGAAC
ATTTTACATGTGTTGAATGTAATACTGGTATCCAAAACTTTGTTTCTCATGAAGGTCAAC
CATTTTGTGAAGTTTGTTATGATAGAAAATTCGTTGTTCACAAAATCTGTAATGTTTGTG
AAAAACCAATCTATGGTACTGTTGTTTCAGCAATGAATAATACTTTTCATTCAGAATGTT
TTGTATGCAGCAATTGCCACTNTTCTTTCCCAGATAATGAATTTTATCAATATGAAAGTA
AACCATGGTGTGCAACATGTATTCAAAACATAACTAAAACAAAATACGAAAAATGTGATC
AATGTCACCAAGAGATTGACTCAAAATCAGATGGTGTCATTAAAGTATTAGGATNTAAAT
ATCACAACAATGGTAAATGTTTCGTGTGTCGTGGATGCCAAACTGTTTTCCCAAACTTAA
ATTATTATGAAATTGAAAATCAACCAATGTGTTATGATTGTGCTATTAAACATTGAAATT
TTTTTTTTCCAAACAAATTGGAGTGTAAAAATAAAAATAAAAATAAAAATAATAATAATA
ATAACAATAATAAAATTTCAAATAAAAATTCTNACATTT

PFSIIXYXFFXXIFFLFFFXIXPXKKKKKKKKKXFXFFXKXGGXXKK---

---PISHQNSSNSFNKSPRKLDGENGELVCARCGGGIEGNHFKALDQAWHIEHFTCVECN
TGIQNFVSHEGQPFCEVCYDRKFVVHKICNVCEKPIYGTVVSAMNNTFHSECFVCSNCHX
SFPDNEFYQYESKPWCATCIQNITKTKYEKCDQCHQEIDSKSDGVIKVLGXKYHNNGKCF
VCRGCQTVFPNLNYYEIENQPMCYDCAIKH*nfffpnklecknknknknnnnnnnnkisn
knsxi

Frame A:
PFSIIXYXFFXXIFFLFFFXIXPXKKKKKKKKKXFXFFXKXGGXXKK---

---tnftskliq*fq*itkkigw*kw*ismckmwwrh*rksfqsirssmay*tfymc*m*
ywypklcfs*rstil*sll**kircsqnl*cl*ktnlwyccfsne*yfsfrmfcmqqlpl
ffpr**ilsi*k*tmvcnmyskhn*nkirkm*smsprd*lkirwch*sirx*isqqw*mf
rvswmpncfpklkll*n*kstnvl*lcy*tlkfffskqigv*k*k*k*k*****q**nfk
*kfxh

Frame B:
lflsxiixfxnxfffyfffxfxxxkkkkkkkkkxfxfxxkxggxxk---

---PISHQNSSNSFNKSPRKLDGENGELVCARCGGGIEGNHFKALDQAWHIEHFTCVECN
TGIQNFVSHEGQPFCEVCYDRKFVVHKICNVCEKPIYGTVVSAMNNTFHSECFVCSNCHX
SFPDNEFYQYESKPWCATCIQNITKTKYEKCDQCHQEIDSKSDGVIKVLGXKYHNNGKCF
VCRGCQTVFPNLNYYEIENQPMCYDCAIKH*nfffpnklecknknknknnnnnnnnkisn
knsxi

Frame C:
ffyhxlxifxixffsifffxxpxkkkkkkkkkkxxxfxkkxgxxxk---

---qfhikthpivsinhqenwmvkmvn*yvqdvvealkeiiskh*ikhgilnilhvlnvi
lvsktlflmkvnhfvkfvmienslftksvmfvknqsmvllfqq*iilfiqnvlyaaiatx
lsqimnfinmkvnhgvqhvfkt*lkqntknvinvtkrltqnqmvslky*dxnittmvnvs
cvvdaklfsqt*iimklkinqcvmivllnieifffqtnwsvkikikikiiiiitiikfqi
kiltf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC139 (VHC139Q) /CSM/VH/VHC1-B/VHC139Q.Seq.d/                       1231   0.0
AHB471 (AHB471Q) /CSM/AH/AHB4-C/AHB471Q.Seq.d/                       1217   0.0
AHL866 (AHL866Q) /CSM/AH/AHL8-C/AHL866Q.Seq.d/                       1207   0.0
AHM412 (AHM412Q) /CSM/AH/AHM4-A/AHM412Q.Seq.d/                       1195   0.0
AHQ576 (AHQ576Q) /CSM/AH/AHQ5-D/AHQ576Q.Seq.d/                       1023   0.0
AFC189 (AFC189Q) /CSM/AF/AFC1-D/AFC189Q.Seq.d/                       1015   0.0
AHP140 (AHP140Q) /CSM/AH/AHP1-B/AHP140Q.Seq.d/                       1003   0.0
AHP117 (AHP117Q) /CSM/AH/AHP1-A/AHP117Q.Seq.d/                        831   0.0
AFM512 (AFM512Q) /CSM/AF/AFM5-A/AFM512Q.Seq.d/                        442   e-123
SLD689 (SLD689Q) /CSM/SL/SLD6-D/SLD689Q.Seq.d/                        127   3e-28

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF231987|AF231987.1 Dictyostelium discoideum LIM domain protein (limD) mRNA, partial cds.  1223   0.0    2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   276   1e-69  1
EI510315|EI510315.1 MUGQ_CH252P228B12T7_CN394_048 CHORI-252 Vervet Monkey Library Chlorocebus aethiops genomic clone CH252-228B12, genomic survey sequence.    50   0.11   1
DD391560|DD391560.1 Method and nucleic acids for the improved treatment of breast cell proliferative disorders.    48   0.42   1
DD209065|DD209065.1 test.                                          48   0.42   1
DD080762|DD080762.1 Method and nucleic acids for the differentiation of prostate tumors.    48   0.42   1
DD061246|DD061246.1 Methods and nucleic acids for the analysis of  hematopoietic cell proliferative disorders.    48   0.42   1
CQ806816|CQ806816.1 Sequence 266 from Patent WO2004035803.         48   0.42   1
BD453023|BD453023.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes.    48   0.42   1
AX825902|AX825902.1 Sequence 154 from Patent WO03072821.           48   0.42   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF231987_1(AF231987|pid:none) Dictyostelium discoideum LIM domai...   458   e-127
BT044983_1(BT044983|pid:none) Salmo salar clone ssal-rgf-509-033...   120   6e-26
AK304760_1(AK304760|pid:none) Homo sapiens cDNA FLJ61577 complet...   110   8e-23
(Q6INU3) RecName: Full=PDZ and LIM domain protein 7;  &BC072179_...   110   8e-23
BX950216_4(BX950216|pid:none) Zebrafish DNA sequence from clone ...   109   1e-22
EU239660_1(EU239660|pid:none) Caenorhabditis elegans pxl-1 isofo...   109   1e-22
(Q09476) RecName: Full=Paxillin homolog 1;  &EU239658_1(EU239658...   109   1e-22
BC104510_1(BC104510|pid:none) Bos taurus transforming growth fac...   108   2e-22
AY206012_1(AY206012|pid:none) Mus musculus PDZ-LIM protein cyphe...   108   2e-22
(Q3MHZ4) RecName: Full=Transforming growth factor beta-1-induced...   108   2e-22

 psg: 1.01  gvh: 0.55  alm: 0.30  top: 1.07  tms: 0.07  mit: 0.30  mip: 0.11
 nuc: 0.30  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VHC139 is cyt

>VHC139F.Seq
CCTTTTTCTATCATTNATTATTNATTTTTTNAATTNATTTTTTTTCTATTTTTTTTTTTN
ATTTNCCCNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTNNTTTTTTNNAAAA
AANGGGGGGNTNNNNAAAAAANNNNNNNNNN

>VHC139Z.Seq
NNNNNNNNNNACCAATTTCACATCAAAACTCATCCAATAGTTTCAATAAATCACCAAGAA
AATTGGATGGTGAAAATGGTGAATTAGTATGTGCAAGATGTGGTGGAGGCATTGAAGGAA
ATCATTTCAAAGCATTAGATCAAGCATGGCATATTGAACATTTTACATGTGTTGAATGTA
ATACTGGTATCCAAAACTTTGTTTCTCATGAAGGTCAACCATTTTGTGAAGTTTGTTATG
ATAGAAAATTCGTTGTTCACAAAATCTGTAATGTTTGTGAAAAACCAATCTATGGTACTG
TTGTTTCAGCAATGAATAATACTTTTCATTCAGAATGTTTTGTATGCAGCAATTGCCACT
NTTCTTTCCCAGATAATGAATTTTATCAATATGAAAGTAAACCATGGTGTGCAACATGTA
TTCAAAACATAACTAAAACAAAATACGAAAAATGTGATCAATGTCACCAAGAGATTGACT
CAAAATCAGATGGTGTCATTAAAGTATTAGGATNTAAATATCACAACAATGGTAAATGTT
TCGTGTGTCGTGGATGCCAAACTGTTTTCCCAAACTTAAATTATTATGAAATTGAAAATC
AACCAATGTGTTATGATTGTGCTATTAAACATTGAAATTTTTTTTTTCCAAACAAATTGG
AGTGTAAAAATAAAAATAAAAATAAAAATAATAATAATAATAACAATAATAAAATTTCAA
ATAAAAATTCTNACATTT

>VHC139P.Seq
CCTTTTTCTATCATTNATTATTNATTTTTTNAATTNATTTTTTTTCTATTTTTTTTTTTN
ATTTNCCCNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTTTNNTTTTTTNNAAAA
AANGGGGGGNTNNNNAAAAAA----------ACCAATTTCACATCAAAACTCATCCAATA
GTTTCAATAAATCACCAAGAAAATTGGATGGTGAAAATGGTGAATTAGTATGTGCAAGAT
GTGGTGGAGGCATTGAAGGAAATCATTTCAAAGCATTAGATCAAGCATGGCATATTGAAC
ATTTTACATGTGTTGAATGTAATACTGGTATCCAAAACTTTGTTTCTCATGAAGGTCAAC
CATTTTGTGAAGTTTGTTATGATAGAAAATTCGTTGTTCACAAAATCTGTAATGTTTGTG
AAAAACCAATCTATGGTACTGTTGTTTCAGCAATGAATAATACTTTTCATTCAGAATGTT
TTGTATGCAGCAATTGCCACTNTTCTTTCCCAGATAATGAATTTTATCAATATGAAAGTA
AACCATGGTGTGCAACATGTATTCAAAACATAACTAAAACAAAATACGAAAAATGTGATC
AATGTCACCAAGAGATTGACTCAAAATCAGATGGTGTCATTAAAGTATTAGGATNTAAAT
ATCACAACAATGGTAAATGTTTCGTGTGTCGTGGATGCCAAACTGTTTTCCCAAACTTAA
ATTATTATGAAATTGAAAATCAACCAATGTGTTATGATTGTGCTATTAAACATTGAAATT
TTTTTTTTCCAAACAAATTGGAGTGTAAAAATAAAAATAAAAATAAAAATAATAATAATA
ATAACAATAATAAAATTTCAAATAAAAATTCTNACATTT