>VHC104 (VHC104Q) /CSM/VH/VHC1-A/VHC104Q.Seq.d/
XXXXXXXXXXGAAGAGGAAGATTCAATAATAACTCCAAAAAATTCATCAATAATTAAAGA
GGAGGTTACATCAGATATTGAAGAATTAGNAACTGATACATCATTTCAATATTCATCAGC
CAACTCTTCAATGATGANTGNTGATCAAGATGAGGAAGAAGAGGATAAGGATGATAAAAA
GAAGAATGAGTCATCAAAAGGTGTANCAAAAACTCATAAAGTTGATGATCCAAAAGTATT
ATCAACAAAATCTTCAACTTTGGCAGCTACTTCCACAAGTA

---EEDSIITPKNSSIIKEEVTSDIEELXTDTSFQYSSANSSMMXXDQDEEEEDKDDKKK
NESSKGVXKTHKVDDPKVLSTKSSTLAATSTS

Frame A:
---krkiq**lqkihq*lkrrlhqilkn*xlihhfnihqptlq**xxikmrkkrirmikr
rmshqkvxqkliklmiqkyyqqnlqlwqllpqv


Frame B:
---rgrfnnnskkfinn*rggyiry*rixn*yiisifisqlfndxx*sr*grrg*g**ke
e*vikrcxkns*s**sksiinkifnfgsyfhk


Frame C:
---EEDSIITPKNSSIIKEEVTSDIEELXTDTSFQYSSANSSMMXXDQDEEEEDKDDKKK
NESSKGVXKTHKVDDPKVLSTKSSTLAATSTS

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC104 (VHC104Q) /CSM/VH/VHC1-A/VHC104Q.Seq.d/                        513   e-145
CFF179 (CFF179Q) /CSM/CF/CFF1-D/CFF179Q.Seq.d/                        206   1e-52
SLC342 (SLC342Q) /CSM/SL/SLC3-B/SLC342Q.Seq.d/                         44   0.001
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                         40   0.017
AFM587 (AFM587Q) /CSM/AF/AFM5-D/AFM587Q.Seq.d/                         40   0.017
VSJ276 (VSJ276Q) /CSM/VS/VSJ2-D/VSJ276Q.Seq.d/                         38   0.068
VFJ634 (VFJ634Q) /CSM/VF/VFJ6-B/VFJ634Q.Seq.d/                         38   0.068
SLK291 (SLK291Q) /CSM/SL/SLK2-D/SLK291Q.Seq.d/                         38   0.068
SLE631 (SLE631Q) /CSM/SL/SLE6-B/SLE631Q.Seq.d/                         38   0.068
SFH314 (SFH314Q) /CSM/SF/SFH3-A/SFH314Q.Seq.d/                         38   0.068

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BU497133|BU497133.1 PfESToab55c12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodiumfalciparum 3D7 cDNA 5', mRNA sequence.    50   0.032  1
BU496188|BU496188.1 PfESToac05a01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    50   0.032  1
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  50   0.032  1
AJ420904|AJ420904.1 Plasmodium falciparum mRNA for Ran-binding protein (rbp1 gene).    50   0.032  1
AC163710|AC163710.3 Gallus gallus chromosome W clone TAM31-16O5, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42   0.099  2
CV684067|CV684067.1 sjs10-010_F02_sjs10-010F02-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    46   0.50   1
CV683779|CV683779.1 sjs10-006_G02_sjs10-006G02-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    46   0.50   1
EJ470735|EJ470735.1 1095403409327 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061005604032 5', genomic survey sequence.    46   0.50   1
EJ459639|EJ459639.1 1093018467990 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002821096 3', genomic survey sequence.    46   0.50   1
EJ192005|EJ192005.1 1092344206400 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001509794 3', genomic survey sequence.    46   0.50   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ356758_1(FJ356758|pid:none) Mantheyus phuwuanensis teashirt zi...    33   3.1

 psg: 0.75  gvh: 0.42  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for VHC104 is nuc

>VHC104Z.Seq
NNNNNNNNNNGAAGAGGAAGATTCAATAATAACTCCAAAAAATTCATCAATAATTAAAGA
GGAGGTTACATCAGATATTGAAGAATTAGNAACTGATACATCATTTCAATATTCATCAGC
CAACTCTTCAATGATGANTGNTGATCAAGATGAGGAAGAAGAGGATAAGGATGATAAAAA
GAAGAATGAGTCATCAAAAGGTGTANCAAAAACTCATAAAGTTGATGATCCAAAAGTATT
ATCAACAAAATCTTCAACTTTGGCAGCTACTTCCACAAGTA