VHC102
Library VH
(Link to library)
Clone ID VHC102
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11249-1|Contig-U12842-1
Original site URL
Representative seq. ID VHC102P
(Link to Original site)
Representative DNA sequence
>VHC102 (VHC102Q) /CSM/VH/VHC1-A/VHC102Q.Seq.d/
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCAXXXXXXX
XXXAAATTGATCCAATATGAAATTCCAGGATTAAAATTAATAAAGGTTAATGAATTANCA
AAATATAGAAATCTTTTCGATACAATACCAGCAAGAATCATTTTAAAAGGTGAAAAAGAA
GTTTATAGATTTTATTTAATTCAAAATATTAGTTCCTTTGAATTAAACCACTCAATTGAA
ATTATTAAAAACTTTTTAACTCTTTATAGTAATCATTATACCAATGATAGTGAATTAAGA
AAATTACAATTTATTCCATCTGAAAATGGTGTTTATTCAACTCCTGATTCATTTTATGTT
TTAGATCCACTTGAAAAAGAATTAATTAGAAAAATCGAACCATTCAAGATTTTAAATTCA
TCTTTGGATGTTTTTATTGGTTATTTAAGAATATTTGGATTGGTTAATAGACCTTCAGAT
AGTCATATATGTTCCAAGATTTCAAGTTTACTTTCCAATCAAGATTCAATAGAAACTTAT
CAAACTTTTATTAATTATTTAAATCAAAGAGGTGAGAATATTACTGTTTCAATAATTAAT
TCTTTCAAAGATATTCCATTTATTCCACCCAGTGAATTTGATACCTATGACGGATTTGCT
CCATATAAATATAAAATTTCATTATCAGAGTGCGCATTATCAAGTTATAAAGATTGTTTA
TTCACTGTAAAAACTCCAATTAAAGTAATTTTCAATTACA
sequence update 2002.10.25
Translated Amino Acid sequence
f*RDKMPQNKSQTIKLSHFLRDNLLNYPESKIFRELIQNAEDARADTVIIKVDEGSYPNN
GLLISNDNQEIESSKELLGPSILIYNNATFQEHDWEGICQISQGSKKENLKSVGNFGLGW
NSVYHITDNPIVYSGNNVWFSDPNERMSGGLFFDLDDEDDYKKCFSFLEPFIQFKES---

---KLIQYEIPGLKLIKVNELXKYRNLFDTIPARIILKGEKEVYRFYLIQNISSFELNHS
IEIIKNFLTLYSNHYTNDSELRKLQFIPSENGVYSTPDSFYVLDPLEKELIRKIEPFKIL
NSSLDVFIGYLRIFGLVNRPSDSHICSKISSLLSNQDSIETYQTFINYLNQRGENITVSI
INSFKDIPFIPPSEFDTYDGFAPYKYKISLSECALSSYKDCLFTVKTPIKVIFNY


Translated Amino Acid sequence (All Frames)
Frame A:
ifkeikcpkikvkq*nylif*eiifltiqnqkylen*fkmqkmleliqs**rlmkahiqi
mgc*fqmitkklkvqkny*vhqf*fiimqlfknmigkefvklvkvvkkki*kvlaisv*v
gtvfii*qiiqlfivvimfgsqiqtke*vvvysli*mtkmiirnvlvf*shsfnlkn---

---KLIQYEIPGLKLIKVNELXKYRNLFDTIPARIILKGEKEVYRFYLIQNISSFELNHS
IEIIKNFLTLYSNHYTNDSELRKLQFIPSENGVYSTPDSFYVLDPLEKELIRKIEPFKIL
NSSLDVFIGYLRIFGLVNRPSDSHICSKISSLLSNQDSIETYQTFINYLNQRGENITVSI
INSFKDIPFIPPSEFDTYDGFAPYKYKISLSECALSSYKDCLFTVKTPIKVIFNY

Frame B:
flkr*napk*ksnnktisffkr*ss*lsrikni*ridskcrrcss*yshnkg**rlisk*
wvvnfk**prn*kfkriirsinfnl**cnfsrt*lgrnlsn*sr**krkfkkcwqfrfrl
eqclsynr*sncl*w**clvlrskrknewwfil*fr*rr*l*emf*ffraihsi*ri---

---n*snmkfqd*n**rlmnxqnieifsiqyqqesf*kvkkkfidfi*fkilvpln*ttq
lkllktf*lfiviiipmivn*enynlfhlkmvfiqllihfmf*ihlkkn*leksnhsrf*
ihlwmfllvi*eyldwlidlqiviyvprfqvyfpikiq*kliklllii*ikevrillfq*
lilskifhlfhpvnlipmtdllhinikfhyqsahyqvikivysl*klqlk*fsit

Frame C:
f*RDKMPQNKSQTIKLSHFLRDNLLNYPESKIFRELIQNAEDARADTVIIKVDEGSYPNN
GLLISNDNQEIESSKELLGPSILIYNNATFQEHDWEGICQISQGSKKENLKSVGNFGLGW
NSVYHITDNPIVYSGNNVWFSDPNERMSGGLFFDLDDEDDYKKCFSFLEPFIQFKES---

---idpi*nsrikinkg**ixki*ksfryntsknhfkr*krsl*ilfnsky*fl*ikpln
*ny*klfnsl**slyq***ikkitiysi*kwclfns*filcfrst*krin*knrtiqdfk
fifgcfywlfkniwig**tfr*symfqdfkftfqsrfnrnlsnfy*lfkskr*eyycfnn
*ffqrysiystq*i*yl*ricsi*i*nfiirvriikl*rlfihcknsn*snfql

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC102 (VHC102Q) /CSM/VH/VHC1-A/VHC102Q.Seq.d/ 1727 0.0
VHE271 (VHE271Q) /CSM/VH/VHE2-C/VHE271Q.Seq.d/ 1168 0.0
VHN647 (VHN647Q) /CSM/VH/VHN6-B/VHN647Q.Seq.d/ 1124 0.0
AHQ220 (AHQ220Q) /CSM/AH/AHQ2-A/AHQ220Q.Seq.d/ 1122 0.0
VHK810 (VHK810Q) /CSM/VH/VHK8-A/VHK810Q.Seq.d/ 628 e-179
VHB767 (VHB767Q) /CSM/VH/VHB7-C/VHB767Q.Seq.d/ 628 e-179
VHD239 (VHD239Q) /CSM/VH/VHD2-B/VHD239Q.Seq.d/ 626 e-178
VHO809 (VHO809Q) /CSM/VH/VHO8-A/VHO809Q.Seq.d/ 609 e-173
VHE123 (VHE123Q) /CSM/VH/VHE1-A/VHE123Q.Seq.d/ 609 e-173
VHK791 (VHK791Q) /CSM/VH/VHK7-D/VHK791Q.Seq.d/ 581 e-164

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 1e-06 20
BX293980|BX293980.2 Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome. 42 7e-05 19
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 36 2e-04 18
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 38 2e-04 18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 3e-04 22
AX344551|AX344551.1 Sequence 2 from Patent WO0200932. 34 8e-04 13
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 36 0.001 12
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 32 0.004 16
CP000111|CP000111.1 Prochlorococcus marinus str. MIT 9312, complete genome. 34 0.004 23
CP000413|CP000413.1 Lactobacillus gasseri ATCC 33323, complete genome. 42 0.008 21
dna update 2007. 4.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9NZJ4) RecName: Full=Sacsin; &AL157766_4(AL157766|pid:none) 105 4e-21
BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 103 2e-20
(Q9JLC8) RecName: Full=Sacsin; 103 2e-20
BC171956_1(BC171956|pid:none) Mus musculus sacsin, mRNA (cDNA cl... 103 2e-20
CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 102 4e-20
BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303... 100 2e-19
AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,... 89 2e-16
AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso... 85 6e-15
AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos... 85 6e-15
CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1... 76 3e-12
protein update 2009. 6.27
PSORT

psg: 0.68 gvh: 0.39 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
24.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHC102 is nuc

5' end seq. ID VHC102F
5' end seq.
>VHC102F.Seq
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCANNNNNNN
NNN
Length of 5' end seq. 543
3' end seq. ID VHC102Z
3' end seq.
>VHC102Z.Seq
NNNNNNNNNNAAATTGATCCAATATGAAATTCCAGGATTAAAATTAATAAAGGTTAATGA
ATTANCAAAATATAGAAATCTTTTCGATACAATACCAGCAAGAATCATTTTAAAAGGTGA
AAAAGAAGTTTATAGATTTTATTTAATTCAAAATATTAGTTCCTTTGAATTAAACCACTC
AATTGAAATTATTAAAAACTTTTTAACTCTTTATAGTAATCATTATACCAATGATAGTGA
ATTAAGAAAATTACAATTTATTCCATCTGAAAATGGTGTTTATTCAACTCCTGATTCATT
TTATGTTTTAGATCCACTTGAAAAAGAATTAATTAGAAAAATCGAACCATTCAAGATTTT
AAATTCATCTTTGGATGTTTTTATTGGTTATTTAAGAATATTTGGATTGGTTAATAGACC
TTCAGATAGTCATATATGTTCCAAGATTTCAAGTTTACTTTCCAATCAAGATTCAATAGA
AACTTATCAAACTTTTATTAATTATTTAAATCAAAGAGGTGAGAATATTACTGTTTCAAT
AATTAATTCTTTCAAAGATATTCCATTTATTCCACCCAGTGAATTTGATACCTATGACGG
ATTTGCTCCATATAAATATAAAATTTCATTATCAGAGTGCGCATTATCAAGTTATAAAGA
TTGTTTATTCACTGTAAAAACTCCAATTAAAGTAATTTTCAATTACA
Length of 3' end seq. 707
Connected seq. ID VHC102P
Connected seq.
>VHC102P.Seq
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCA-------
---AAATTGATCCAATATGAAATTCCAGGATTAAAATTAATAAAGGTTAATGAATTANCA
AAATATAGAAATCTTTTCGATACAATACCAGCAAGAATCATTTTAAAAGGTGAAAAAGAA
GTTTATAGATTTTATTTAATTCAAAATATTAGTTCCTTTGAATTAAACCACTCAATTGAA
ATTATTAAAAACTTTTTAACTCTTTATAGTAATCATTATACCAATGATAGTGAATTAAGA
AAATTACAATTTATTCCATCTGAAAATGGTGTTTATTCAACTCCTGATTCATTTTATGTT
TTAGATCCACTTGAAAAAGAATTAATTAGAAAAATCGAACCATTCAAGATTTTAAATTCA
TCTTTGGATGTTTTTATTGGTTATTTAAGAATATTTGGATTGGTTAATAGACCTTCAGAT
AGTCATATATGTTCCAAGATTTCAAGTTTACTTTCCAATCAAGATTCAATAGAAACTTAT
CAAACTTTTATTAATTATTTAAATCAAAGAGGTGAGAATATTACTGTTTCAATAATTAAT
TCTTTCAAAGATATTCCATTTATTCCACCCAGTGAATTTGATACCTATGACGGATTTGCT
CCATATAAATATAAAATTTCATTATCAGAGTGCGCATTATCAAGTTATAAAGATTGTTTA
TTCACTGTAAAAACTCCAATTAAAGTAATTTTCAATTACA
Length of connected seq. 1230
Full length Seq ID -
Full length Seq. -
Length of full length seq. -