VHB884 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB884
Library	VH (Link to library)
Clone ID	VHB884 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11114-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB8-D/VHB884Q.Seq.d/
Representative seq. ID	VHB884P (Link to Original site)
Representative DNA sequence	>VHB884 (VHB884Q) /CSM/VH/VHB8-D/VHB884Q.Seq.d/ ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA AATATTTTATCAAATTGTATTATTTAGAAACTGATGGAGAAGAAATAATAAAATTAGTGA AAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAATATT TGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTATCAC ATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGAGAAT CATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAATTAT TAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATCGAAC TTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAATTCGG CAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGTGAAG ATTATGAAAAGAGATTGATTAXXXXXXXXXXAAGTATAGATCAGTCGTAAGAGAGAATCC ATCATTCATTCAATACTTTAGAACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACA TTGGTTCTCGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTG CTATTCCTTGGGTATTCAGTTTTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTA TTGAAGATGCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGT ACAAAGAATGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAA CTGATCCTCAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTT TAGGTATTGAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTGGAATTAACAA AACATAAAACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAA CCTTTATGGATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTC AAAAACCAGATGGAACAAATGATGATGCTGATCCAATATTAATTGATACTTTAATTATTA CTTTTAATGGTATTTCTGCTGGTATGAAAAATACTGGTTAAATTATAATTATAAAATTTT AATAATCAATTAATTAATAATAATAAAAATAATAATAATAAAAATAATAATAATAGTTCT CCATTATTTCAAAGATGCGNAAAAATAAATAAATTAAAAATTTA
sequence update	2002.10.25
Translated Amino Acid sequence	flfnfitkvhfkngfsrrftifwrntrfrINYKISKYFIKLYYLETDGEEIIKLVK TLILTQSPGERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVRES FLNNEDDLKYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKNSA MGEALSSLDNQQLTMFEREDYEKRLI--- ---KYRSVVRENPSFIQYFRTSTSPTnglphwfsscqknsrkiiwigtftcyslgiqf ftkikftslvryrcnfrgknkrmgiyqnvqrmailfihyfgrdgtlenssnfit lqsnvstsssstfryndthknykcnlginktnsstr*npstfcfnsnlygsnql yssnpktsfnsktrwnk*csninyfnyyfwyfcwyekywlnynykiliinlii ikiiiikiiiivlhyfkdaxkin*kf
Translated Amino Acid sequence (All Frames)	Frame A: ifylilsqrsilkmglagdspydfgeikpddldksitkfqnilsnciiklmekkn* khflnhqvkelqnsrnikrlaivirkhmyqecyhiyilmlqnniiwldqlen hsstmkmisihvripfnnyikvltrrvftmhfnkrsnlfrhiqhkldvlfprir qwvkhyrhwiisnqclnvkimkrdl--- ---KYRSVVRENPSFIQYFRTSTSPTnglphwfsscqknsrkiiwigtftcyslgiqf ftkikftslvryrcnfrgknkrmgiyqnvqrmailfihyfgrdgtlenssnfit lqsnvstsssstfryndthknykcnlginktnsstr*npstfcfnsnlygsnql yssnpktsfnsktrwnk*csninyfnyyfwyfcwyekywlnynykiliinlii ikiiiikiiiivlhyfkdaxkinkf Frame B: ffifyhkgpfkwvqeihhmileklnqmiinqlqnfkifyqivlfrnwrrnnkise ninfnsitrknyrihrgifekdqskygsieciksvitsiefnccrttsfgisri ipqqrfkvfmeyhstiiksrsqgeclqcinstkdrtcfngtsntnyetyynfqefg ngsiivigsaidnvtrlkeid--- ---sidqserihhsfntlelqpvqpemvylnigsrpakriaaksfglehlraipwvfsf sqnrlnlpvwlgiedaileaktkgwgsdinemykewpffsstidlvemvllktdpqislr ynqmlvpaqvqplgiemideltkttnaileltkhktlqqdnkilqhfvsirrtfmdpiny iqvetlkrlrstqkpdgtnddadpilidtliitfngisagmkntgiiiikfsin** k*k*fsiiskmrknkiknl Frame C: flfnfitkvhfkngfsrrftifwrntrfrINYKISKYFIKLYYLETDGEEIIKLVK TLILTQSPGERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVRES FLNNEDDLKYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKNSA MGEALSSLDNQQLTMFEREDYEKRLI--- ---visrkresiihsilnfnqsnlkwstltlvlvlpkepqnhldwniyvlflgysvf hkidiyqfgvlkmqfrqkqkdgdlismkctknghsfhplliwrwysklilkfhyv tikcyqlkfnlvlklmnsqklqmqswnqniklfnkiiksfnilfqfveplwiqsii fklkplkdfvqlknqmeqmmmliqylilllllmvfllvkilvkll*nfnnqlinnn knnnnknnnnssplfqrcxkinklki
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB884 (VHB884Q) /CSM/VH/VHB8-D/VHB884Q.Seq.d/ 2512 0.0 AHD621 (AHD621Q) /CSM/AH/AHD6-A/AHD621Q.Seq.d/ 1320 0.0 AHI865 (AHI865Q) /CSM/AH/AHI8-C/AHI865Q.Seq.d/ 1314 0.0 AHF196 (AHF196Q) /CSM/AH/AHF1-D/AHF196Q.Seq.d/ 1304 0.0 SHB261 (SHB261Q) /CSM/SH/SHB2-C/SHB261Q.Seq.d/ 1291 0.0 SHL264 (SHL264Q) /CSM/SH/SHL2-C/SHL264Q.Seq.d/ 1285 0.0 VHP752 (VHP752Q) /CSM/VH/VHP7-C/VHP752Q.Seq.d/ 1235 0.0 AHI617 (AHI617Q) /CSM/AH/AHI6-A/AHI617Q.Seq.d/ 1205 0.0 VHL105 (VHL105Q) /CSM/VH/VHL1-A/VHL105Q.Seq.d/ 1199 0.0 VHI520 (VHI520Q) /CSM/VH/VHI5-A/VHI520Q.Seq.d/ 1197 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N DQ538352\|DQ538352.1 Bienertia sinuspersici phosphoenolpyruvate carboxylase mRNA, complete cds. 48 2e-07 2 DQ538353\|DQ538353.1 Suaeda aralocaspica phosphoenolpyruvate carboxylase mRNA, partial cds. 48 2e-07 2 DQ538354\|DQ538354.1 Suaeda eltonica phosphoenolpyruvate carboxylase mRNA, partial cds. 40 4e-05 2 CJ768150\|CJ768150.1 Ipomoea nil cDNA clone:jmsf51j06, 3' end. 46 2e-04 2 BJ573459\|BJ573459.1 Ipomoea nil cDNA clone:jm23o22, 3' end, single read. 46 2e-04 2 BJ572016\|BJ572016.1 Ipomoea nil cDNA clone:jm19g15, 3' end, single read. 46 2e-04 2 CO911440\|CO911440.1 BJ03019B12 BJ03 Capsicum annuum cDNA 5', mRNA sequence. 56 0.003 1 E03014\|E03014.1 DNA encoding phosphoenolpyruvic acid carboxylase(PEPC). 56 0.003 1 X59016\|X59016.1 N.tabacum mRNA for phosphoenolpyruvate carboxylase. 56 0.003 1 AB078720\|AB078720.3 Nicotiana sylvestris Nsppc3 gene for phosphoenolpyruvate carboxylase, partial cds. 56 0.003 1
dna update	2007. 4.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value FB830099_1(FB830099\|pid:none) Sequence 49372 from Patent WO20080... 176 3e-45 EF634318_1(EF634318\|pid:none) Ricinus communis phosphoenolpyruva... 177 7e-45 AM424873_1(AM424873\|pid:none) Vitis vinifera contig VV78X088960.... 174 7e-44 AC011914_12(AC011914\|pid:none) Arabidopsis thaliana chromosome 1... 173 1e-43 AC008075_1(AC008075\|pid:none) Arabidopsis thaliana chromosome 1 ... 173 1e-43 BT070413_1(BT070413\|pid:none) Picea sitchensis clone WS02727_O18... 171 6e-43 AJ231278_1(AJ231278\|pid:none) Anthoceros punctatus partial mRNA ... 171 1e-41 (Q6R2V6) RecName: Full=Phosphoenolpyruvate carboxylase 2; ... 172 2e-41 (A5W881) RecName: Full=Phosphoenolpyruvate carboxylase; ... 152 6e-40 CP000949_4086(CP000949\|pid:none) Pseudomonas putida W619, comple... 152 6e-40
protein update	2009. 6.27
PSORT	psg: 0.64 gvh: 0.43 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 32.0 %: nuclear 28.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for VHB884 is cyt
5' end seq. ID	VHB884F
5' end seq.	>VHB884F.Seq ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA AATATTTTATCAAATTGTATTATTTAGAAACTGATGGAGAAGAAATAATAAAATTAGTGA AAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAATATT TGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTATCAC ATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGAGAAT CATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAATTAT TAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATCGAAC TTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAATTCGG CAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGTGAAG ATTATGAAAAGAGATTGATTANNNNNNNNNN
Length of 5' end seq.	631
3' end seq. ID	VHB884Z
3' end seq.	>VHB884Z.Seq NNNNNNNNNNAAGTATAGATCAGTCGTAAGAGAGAATCCATCATTCATTCAATACTTTAG AACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACATTGGTTCTCGTCCTGCCAAAA GAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTGCTATTCCTTGGGTATTCAGTT TTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTATTGAAGATGCAATTTTAGAGG CAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGTACAAAGAATGGCCATTCTTTT CATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAACTGATCCTCAAATTTCATTAC GTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTTTAGGTATTGAAATGATTGATG AACTCACAAAAACTACAAATGCAATCTTGGAATTAACAAAACATAAAACTCTTCAACAAG ATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAACCTTTATGGATCCAATCAATT ATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTCAAAAACCAGATGGAACAAATG ATGATGCTGATCCAATATTAATTGATACTTTAATTATTACTTTTAATGGTATTTCTGCTG GTATGAAAAATACTGGTTAAATTATAATTATAAAATTTTAATAATCAATTAATTAATAAT AATAAAAATAATAATAATAAAAATAATAATAATAGTTCTCCATTATTTCAAAGATGCGNA AAAATAAATAAATTAAAAATTTA
Length of 3' end seq.	803
Connected seq. ID	VHB884P
Connected seq.	>VHB884P.Seq ATTTTTTATTTAATTTTATCACAAAGGTCCATTTTAAAAATGGGTTTAGCAGGAGATTCA CCATATGATTTTGGAGAAATTAAACCAGATGATTTAGATAAATCAATTACAAAATTTCAA AATATTTTATCAAATTGTATTATTTAGAAACTGATGGAGAAGAAATAATAAAATTAGTGA AAACATTAATTTTAACTCAATCACCAGGTGAAAGAACTACAGAATTCATAGAGGAATATT TGAAAAAGATTAGCAATCTAAGTAATACGGAAGCATTGAATGTATCAAGAGTGTTATCAC ATCTATTGAATTTAATTAATGTTGCAGAACAACATCATTTGGTTAGATCAGTTAGAGAAT CATTCCTCAACAATGAAGATGATTTAAAGTATTCATGTGAGAATACCATTCAACAATTAT TAAATCAAGGTCTTGACAAGGAGAGTGTTTACAATGCATTAATTCAACAAAAGATCGAAC TTGTTTTAACGGCACATCCAACACAAATTATGAGACGTACTATAATTTCCAAGAATTCGG CAATGGGTGAAGCATTATCGTCATTGGATAATCAGCAATTGACAATGTTTGAACGTGAAG ATTATGAAAAGAGATTGATTA----------AAGTATAGATCAGTCGTAAGAGAGAATCC ATCATTCATTCAATACTTTAGAACTTCAACCAGTCCAACCTGAAATGGTCTACCTTAACA TTGGTTCTCGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAACATTTACGTG CTATTCCTTGGGTATTCAGTTTTTCACAAAATAGATTAAATTTACCAGTTTGGTTAGGTA TTGAAGATGCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATCAATGAAATGT ACAAAGAATGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAA CTGATCCTCAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTT TAGGTATTGAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTGGAATTAACAA AACATAAAACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAA CCTTTATGGATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTC AAAAACCAGATGGAACAAATGATGATGCTGATCCAATATTAATTGATACTTTAATTATTA CTTTTAATGGTATTTCTGCTGGTATGAAAAATACTGGTTAAATTATAATTATAAAATTTT AATAATCAATTAATTAATAATAATAAAAATAATAATAATAAAAATAATAATAATAGTTCT CCATTATTTCAAAGATGCGNAAAAATAAATAAATTAAAAATTTA
Length of connected seq.	1414
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas