>VHB847 (VHB847Q) /CSM/VH/VHB8-B/VHB847Q.Seq.d/
ATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTAA
AAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTAG
AGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAGA
AAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAAC
TGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTGC
CGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTGT
AGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTTT
AAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAGT
TGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTTT
AGGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAGC
TACCCTTGGTCGTATTATGAACGTTATTGGXXXXXXXXXX

*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
GRGALVLNTGSPLMVPVGQATLGRIMNVI---

Frame A:
ivliitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststknftr
kril*ke*esfr*rik*rin*s*lfkikrksrcctssnwcrr*cllptr*itihq*cfnc
r*fps*kcrksn*rs*qpifkg*nrfqqcsnfkh*isfrscstfr*wyrslcrsryy*wf
rswctrpqhwfpidgssrssypwsyyery---


Frame B:
*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
GRGALVLNTGSPLMVPVGQATLGRIMNVI---


Frame C:
spdyyiflkqkcllledylktshklaklqlkpqfvlsqlevskllqltkpqhqhqklhkk
kntlkrirvf*iknqmknqlkliiqn*tkikvlyik*lvpslmftshtvnyhtsmml*l*
misklkmskk*lkiltthl*rvksistmfqfqtln*f*kllni*vmvsfvvslsillmv*
vvvhssstlvph*wfqsvklplvvl*tll---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ261 (VHQ261Q) /CSM/VH/VHQ2-C/VHQ261Q.Seq.d/                       1249   0.0
VHM838 (VHM838Q) /CSM/VH/VHM8-B/VHM838Q.Seq.d/                       1249   0.0
VHM626 (VHM626Q) /CSM/VH/VHM6-B/VHM626Q.Seq.d/                       1249   0.0
VHM150 (VHM150Q) /CSM/VH/VHM1-C/VHM150Q.Seq.d/                       1249   0.0
VHK507 (VHK507Q) /CSM/VH/VHK5-A/VHK507Q.Seq.d/                       1249   0.0
VHK118 (VHK118Q) /CSM/VH/VHK1-A/VHK118Q.Seq.d/                       1249   0.0
VHI543 (VHI543Q) /CSM/VH/VHI5-B/VHI543Q.Seq.d/                       1249   0.0
VHG646 (VHG646Q) /CSM/VH/VHG6-B/VHG646Q.Seq.d/                       1249   0.0
VHE627 (VHE627Q) /CSM/VH/VHE6-B/VHE627Q.Seq.d/                       1249   0.0
VHE453 (VHE453Q) /CSM/VH/VHE4-C/VHE453Q.Seq.d/                       1249   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BW044273|BW044273.1 Ciona intestinalis cDNA, clone:cibd055e03, 5' end, single read.    52   5e-09  3
AX109755|AX109755.1 Sequence 488 from Patent WO0123604.            66   1e-07  2
AX109756|AX109756.1 Sequence 489 from Patent WO0123604.            66   1e-07  2
EC744623|EC744623.1 PSE00005969 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    56   7e-07  2
EK086769|EK086769.1 1092961158890 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001957640 5', genomic survey sequence.    66   1e-06  1
EK066176|EK066176.1 1092960126929 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001957640 3', genomic survey sequence.    66   1e-06  1
EJ869965|EJ869965.1 1093018341232 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002804819 5', genomic survey sequence.    66   1e-06  1
EJ812239|EJ812239.1 1093017496340 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002804819 3', genomic survey sequence.    66   1e-06  1
EJ139649|EJ139649.1 1092343639553 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001502735 3', genomic survey sequence.    62   5e-06  2
AX109738|AX109738.1 Sequence 471 from Patent WO0123604.            64   5e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1MRB8) RecName: Full=ATP synthase subunit beta;          EC=3....   105   8e-22
(A1VFJ5) RecName: Full=ATP synthase subunit beta;          EC=3....   100   4e-20
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;...    99   1e-19
EF085070_1(EF085070|pid:none) Picea sitchensis clone WS02728_O12...    98   2e-19
(P17614) RecName: Full=ATP synthase subunit beta, mitochondrial;...    98   2e-19
(P42467) RecName: Full=ATP synthase subunit beta;          EC=3....    97   3e-19
(Q313W0) RecName: Full=ATP synthase subunit beta;          EC=3....    97   4e-19
(P42469) RecName: Full=ATP synthase subunit beta;          EC=3....    97   4e-19
(A0LLF8) RecName: Full=ATP synthase subunit beta;          EC=3....    97   4e-19
(A7HIX7) RecName: Full=ATP synthase subunit beta;          EC=3....    97   5e-19

 psg: 0.65  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: nuclear

>> prediction for VHB847 is mit

>VHB847F.Seq
ATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTAA
AAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTAG
AGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAGA
AAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAAC
TGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTGC
CGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTGT
AGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTTT
AAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAGT
TGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTTT
AGGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAGC
TACCCTTGGTCGTATTATGAACGTTATTGGNNNNNNNNNN