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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB833
Library VH
(Link to library)
Clone ID VHB833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16597-1
Original site URL
Representative seq. ID VHB833P
(Link to Original site)
Representative DNA sequence 
>VHB833 (VHB833Q) /CSM/VH/VHB8-B/VHB833Q.Seq.d/
AAAATNAATTTCCTTTAAAGATAGTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAAT
TAACAAATAAAGAGATTACAGCAATCAAGGGTATTTCAAAATTATTTGATGATAAGAAAT
ACAGTAAAGGTTTAAAAGAGTGTAATGCAATTTTAAAGAATCATCCAGAAAATCCAGATG
CATCATGTTTTAAGAGGTTGATTTTATACAATTTAGAACAACAATATGAAGCACGTGAAA
ATGCAATCAAAACCACCAAAACCTTACCAACCAACTCAATGGCATGGCATACATTAGGTT
ACATTTATAAATTGGATAAGAACTATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAA
AATTCAATAAAGAAAGTTCACAAATCTTAAAAGAATTAGCACCACTTCAATTATATTCAA
GAGATTTAGAAGGTTTAAAGGAAACGTATGCAACATTATTAAAATTACAACCAACTCATA
AACCACATTGGACAGGATTAGTGACTACATATCAATTAATGGGACAAACTAAATCAGCAT
TATCAGTATTTGAAAGATATTTAGATACACTCGAAGAGAAAGATTTAGTTGGTGTTAAAA
AGACTGAATCACTTCTCTACAGAXXXXXXXXXXCAGAAGTTATGGCACCATTGAAAAAAG
TACCAGCAATTAAGAAACCAGCACCAAAACCATNTCAATTGGAACCAAAGAAAGATCCAA
ACACTGGTCTCACCATTCCAGAGGATGACGATTTGAATGGTAAAAAGTTCTTGGTTAAAC
AAGTTAATCTCATGGATTCAGCTCAACTCATTTTAGATAATCTCTTGAAAAATACAAATG
ATATTGAAATTTATTCATTAGCTTGCCAAGTTAATACACATCAAAAGAAATATTTATTAG
TATTAAAATCATTGGTTAAAATTAAATCAATTAATGAAAATAGTCCATGTTATTATGAAA
ATTTAGTTGATTTAATGATTAAAGTATCAGAAGATAAAGAGGTATCAGCAATTGTTAAAG
CAGCAGTTGAAAAACAAGCAGGTTTTTCATCAGATGTTGAATCAATTTTAGCAAACAACC
AAACTTATCTCGAAAAACTTGGTGACAATGTTACCGCTCAACATCGTTTCGTTGTTGGTA
AAATCATTGCCAAACTTTCACCATCATCACTTGATAAAGCATCAGAATTGATTTTGAATG
TTCAAGGTGAAACAAGTTGGAAACAATGCGCTGACAACCTTCAATCTCTTTCTCTTGTAT
CTTCCGAACTCACTTCTAAATACAGAGAAAAATTACACGAACATTTCCCAATTGCTAACT
ATTTCCAACCAAAAGTGAAAATTAATTCAAAATAAAAAAAATAATAATAANAATAATAAA
TAANATCAATTTAAAAATAAACAATCAATAAATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
nxfplkivf*RKMAPPTKELTNKEITAIKGISKLFDDKKYSKGLKECNAILKNHPENPDA
SCFKRLILYNLEQQYEARENAIKTTKTLPTNSMAWHTLGYIYKLDKNYLDATTAFKNASK
FNKESSQILKELAPLQLYSRDLEGLKETYATLLKLQPTHKPHWTGLVTTYQLMGQTKSAL
SVFERYLDTLEEKDLVGVKKTESLLYR---

---EVMAPLKKVPAIKKPAPKPXQLEPKKDPNTGLTIPEDDDLNGKKFLVKQVNLMDSAQ
LILDNLLKNTNDIEIYSLACQVNTHQKKYLLVLKSLVKIKSINENSPCYYENLVDLMIKV
SEDKEVSAIVKAAVEKQAGFSSDVESILANNQTYLEKLGDNVTAQHRFVVGKIIAKLSPS
SLDKASELILNVQGETSWKQCADNLQSLSLVSSELTSKYREKLHEHFPIANYFQPKVKIN
SK*kk***x**ixsi*k*tink*
Translated Amino Acid sequence (All Frames) 
Frame A:
kxnfl*r*ffkekwhhqqkn*qikrlqqsrvfqnylmirntvkv*ksvmqf*riiqkiqm
hhvlrg*fyti*nnnmkhvkmqskppkpyqptqwhgih*vtfinwirtismqlqplkmlq
nsikkvhks*kn*hhfnyiqei*kv*rkrmqhy*nynqlinhigqd**lhin*wdklnqh
yqylkdi*ihskrki*lvlkrlnhfst---

---qklwhh*kkyqqlrnqhqnhxnwnqrkiqtlvspfqrmti*mvksswlnkliswiql
nsf*iis*kiqmilkfih*laklihikrniy*y*nhwlklnqlmkivhvimki*li**lk
yqkikryqqllkqqlknkqvfhqmlnqf*qttklisknlvtmlplnivsllvkslpnfhh
hhlikhqn*f*mfkvkqvgnnalttfnlfllylpnsllnteknytnisqlltisnqk*kl
iqnkknnnxnnk*xqfknkqsink

Frame B:
kxisfkdsflkkngttnkrink*rdysnqgyfkii***eiq*rfkrv*cnfkessrksrc
imf*evdfiqfrtti*st*kcnqnhqnltnqlngmayirlhl*ig*elsrcnysl*kcfk
iq*rkftnlkristtsiifkrfrrfkgnvcniikittns*ttldrisdyisingtn*isi
isi*kifrytrrerfswc*kd*itslq---

---rsygtiekstsn*etstktxsigtkerskhwshhsrg*rfew*kvlg*ts*shgfss
thfr*slekyk*y*nlfislps*ytskeifisikiig*n*in**k*smll*kfs*fnd*s
irr*rgisnc*sss*ktsrffirc*infskqpnlsrktw*qcyrstsfrcw*nhcqtfti
it**siridfecsr*nkletmr*qpsisfscifrthf*iqrkitrtfpnc*lfptksen*
fkikkiiixiinxinlkinnq*in

Frame C:
nxfplkivf*RKMAPPTKELTNKEITAIKGISKLFDDKKYSKGLKECNAILKNHPENPDA
SCFKRLILYNLEQQYEARENAIKTTKTLPTNSMAWHTLGYIYKLDKNYLDATTAFKNASK
FNKESSQILKELAPLQLYSRDLEGLKETYATLLKLQPTHKPHWTGLVTTYQLMGQTKSAL
SVFERYLDTLEEKDLVGVKKTESLLYR---

---EVMAPLKKVPAIKKPAPKPXQLEPKKDPNTGLTIPEDDDLNGKKFLVKQVNLMDSAQ
LILDNLLKNTNDIEIYSLACQVNTHQKKYLLVLKSLVKIKSINENSPCYYENLVDLMIKV
SEDKEVSAIVKAAVEKQAGFSSDVESILANNQTYLEKLGDNVTAQHRFVVGKIIAKLSPS
SLDKASELILNVQGETSWKQCADNLQSLSLVSSELTSKYREKLHEHFPIANYFQPKVKIN
SK*kk***x**ixsi*k*tink*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB833 (VHB833Q) /CSM/VH/VHB8-B/VHB833Q.Seq.d/                       2565   0.0
VHB261 (VHB261Q) /CSM/VH/VHB2-C/VHB261Q.Seq.d/                       1376   0.0
VHD207 (VHD207Q) /CSM/VH/VHD2-A/VHD207Q.Seq.d/                       1370   0.0
VHI682 (VHI682Q) /CSM/VH/VHI6-D/VHI682Q.Seq.d/                       1362   0.0
VHI489 (VHI489Q) /CSM/VH/VHI4-D/VHI489Q.Seq.d/                       1352   0.0
AHD285 (AHD285Q) /CSM/AH/AHD2-D/AHD285Q.Seq.d/                       1332   0.0
VHA830 (VHA830Q) /CSM/VH/VHA8-B/VHA830Q.Seq.d/                       1320   0.0
VHC749 (VHC749Q) /CSM/VH/VHC7-C/VHC749Q.Seq.d/                       1316   0.0
VHO243 (VHO243Q) /CSM/VH/VHO2-B/VHO243Q.Seq.d/                       1263   0.0
VHJ221 (VHJ221Q) /CSM/VH/VHJ2-A/VHJ221Q.Seq.d/                       1261   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   882   0.0    5
AC120400|AC120400.11 Mus musculus chromosome 1, clone RP24-351P4, complete sequence.    44   0.014  7
CR457451|CR457451.2 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  CH211-197B3.    52   0.044  1
BX511270|BX511270.10 Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14.    52   0.044  1
AC161408|AC161408.4 Mus musculus chromosome 1, clone RP24-329G10, complete sequence.    44   0.056  4
CQ655070|CQ655070.1 Sequence 12027 from Patent WO0234771.          38   0.056  10
AX954530|AX954530.1 Sequence 1376 from Patent WO03093306.          38   0.056  10
AE017143|AE017143.1 Haemophilus ducreyi strain 35000HP complete genome.    36   0.091  2
AZ539456|AZ539456.1 ENTDG45TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.13   2
AC153821|AC153821.6 Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.    42   0.24   6
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_76(AC116305|pid:none) Dictyostelium discoideum chromoso...   391   e-107
AK118131_1(AK118131|pid:none) Arabidopsis thaliana At1g80410 mRN...   114   7e-24
EU952143_1(EU952143|pid:none) Zea mays clone 1211771 hypothetica...   113   1e-23
AC018849_25(AC018849|pid:none) Arabidopsis thaliana chromosome 1...   110   1e-22
AP007155_890(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   110   1e-22
BC142456_1(BC142456|pid:none) Bos taurus NMDA receptor regulated...   108   5e-22
BX640665_1(BX640665|pid:none) Homo sapiens mRNA; cDNA DKFZp686O0...   107   8e-22
AY391464_1(AY391464|pid:none) Danio rerio transcriptional coacti...   107   8e-22
(Q6N069) RecName: Full=NMDA receptor-regulated 1-like protein;  ...   107   8e-22
BC044392_1(BC044392|pid:none) Danio rerio NMDA receptor-regulate...   107   8e-22
protein update 2009. 6.27
PSORT 

 psg: 0.63  gvh: 0.23  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for VHB833 is nuc
5' end seq. ID VHB833F
5' end seq. 
>VHB833F.Seq
AAAATNAATTTCCTTTAAAGATAGTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAAT
TAACAAATAAAGAGATTACAGCAATCAAGGGTATTTCAAAATTATTTGATGATAAGAAAT
ACAGTAAAGGTTTAAAAGAGTGTAATGCAATTTTAAAGAATCATCCAGAAAATCCAGATG
CATCATGTTTTAAGAGGTTGATTTTATACAATTTAGAACAACAATATGAAGCACGTGAAA
ATGCAATCAAAACCACCAAAACCTTACCAACCAACTCAATGGCATGGCATACATTAGGTT
ACATTTATAAATTGGATAAGAACTATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAA
AATTCAATAAAGAAAGTTCACAAATCTTAAAAGAATTAGCACCACTTCAATTATATTCAA
GAGATTTAGAAGGTTTAAAGGAAACGTATGCAACATTATTAAAATTACAACCAACTCATA
AACCACATTGGACAGGATTAGTGACTACATATCAATTAATGGGACAAACTAAATCAGCAT
TATCAGTATTTGAAAGATATTTAGATACACTCGAAGAGAAAGATTTAGTTGGTGTTAAAA
AGACTGAATCACTTCTCTACAGANNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID VHB833Z
3' end seq. 
>VHB833Z.Seq
NNNNNNNNNNCAGAAGTTATGGCACCATTGAAAAAAGTACCAGCAATTAAGAAACCAGCA
CCAAAACCATNTCAATTGGAACCAAAGAAAGATCCAAACACTGGTCTCACCATTCCAGAG
GATGACGATTTGAATGGTAAAAAGTTCTTGGTTAAACAAGTTAATCTCATGGATTCAGCT
CAACTCATTTTAGATAATCTCTTGAAAAATACAAATGATATTGAAATTTATTCATTAGCT
TGCCAAGTTAATACACATCAAAAGAAATATTTATTAGTATTAAAATCATTGGTTAAAATT
AAATCAATTAATGAAAATAGTCCATGTTATTATGAAAATTTAGTTGATTTAATGATTAAA
GTATCAGAAGATAAAGAGGTATCAGCAATTGTTAAAGCAGCAGTTGAAAAACAAGCAGGT
TTTTCATCAGATGTTGAATCAATTTTAGCAAACAACCAAACTTATCTCGAAAAACTTGGT
GACAATGTTACCGCTCAACATCGTTTCGTTGTTGGTAAAATCATTGCCAAACTTTCACCA
TCATCACTTGATAAAGCATCAGAATTGATTTTGAATGTTCAAGGTGAAACAAGTTGGAAA
CAATGCGCTGACAACCTTCAATCTCTTTCTCTTGTATCTTCCGAACTCACTTCTAAATAC
AGAGAAAAATTACACGAACATTTCCCAATTGCTAACTATTTCCAACCAAAAGTGAAAATT
AATTCAAAATAAAAAAAATAATAATAANAATAATAAATAANATCAATTTAAAAATAAACA
ATCAATAAATAAAT
Length of 3' end seq. 794
Connected seq. ID VHB833P
Connected seq. 
>VHB833P.Seq
AAAATNAATTTCCTTTAAAGATAGTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAAT
TAACAAATAAAGAGATTACAGCAATCAAGGGTATTTCAAAATTATTTGATGATAAGAAAT
ACAGTAAAGGTTTAAAAGAGTGTAATGCAATTTTAAAGAATCATCCAGAAAATCCAGATG
CATCATGTTTTAAGAGGTTGATTTTATACAATTTAGAACAACAATATGAAGCACGTGAAA
ATGCAATCAAAACCACCAAAACCTTACCAACCAACTCAATGGCATGGCATACATTAGGTT
ACATTTATAAATTGGATAAGAACTATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAA
AATTCAATAAAGAAAGTTCACAAATCTTAAAAGAATTAGCACCACTTCAATTATATTCAA
GAGATTTAGAAGGTTTAAAGGAAACGTATGCAACATTATTAAAATTACAACCAACTCATA
AACCACATTGGACAGGATTAGTGACTACATATCAATTAATGGGACAAACTAAATCAGCAT
TATCAGTATTTGAAAGATATTTAGATACACTCGAAGAGAAAGATTTAGTTGGTGTTAAAA
AGACTGAATCACTTCTCTACAGA----------CAGAAGTTATGGCACCATTGAAAAAAG
TACCAGCAATTAAGAAACCAGCACCAAAACCATNTCAATTGGAACCAAAGAAAGATCCAA
ACACTGGTCTCACCATTCCAGAGGATGACGATTTGAATGGTAAAAAGTTCTTGGTTAAAC
AAGTTAATCTCATGGATTCAGCTCAACTCATTTTAGATAATCTCTTGAAAAATACAAATG
ATATTGAAATTTATTCATTAGCTTGCCAAGTTAATACACATCAAAAGAAATATTTATTAG
TATTAAAATCATTGGTTAAAATTAAATCAATTAATGAAAATAGTCCATGTTATTATGAAA
ATTTAGTTGATTTAATGATTAAAGTATCAGAAGATAAAGAGGTATCAGCAATTGTTAAAG
CAGCAGTTGAAAAACAAGCAGGTTTTTCATCAGATGTTGAATCAATTTTAGCAAACAACC
AAACTTATCTCGAAAAACTTGGTGACAATGTTACCGCTCAACATCGTTTCGTTGTTGGTA
AAATCATTGCCAAACTTTCACCATCATCACTTGATAAAGCATCAGAATTGATTTTGAATG
TTCAAGGTGAAACAAGTTGGAAACAATGCGCTGACAACCTTCAATCTCTTTCTCTTGTAT
CTTCCGAACTCACTTCTAAATACAGAGAAAAATTACACGAACATTTCCCAATTGCTAACT
ATTTCCAACCAAAAGTGAAAATTAATTCAAAATAAAAAAAATAATAATAANAATAATAAA
TAANATCAATTTAAAAATAAACAATCAATAAATAAAT
Length of connected seq. 1407
Full length Seq ID -
Full length Seq. -
Length of full length seq. -