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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB830
Library VH
(Link to library)
Clone ID VHB830
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15304-1
Original site URL
Representative seq. ID VHB830P
(Link to Original site)
Representative DNA sequence 
>VHB830 (VHB830Q) /CSM/VH/VHB8-B/VHB830Q.Seq.d/
ATATTTTTTTTTCTACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTG
GCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCAC
CAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATATT
TACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGAC
ACCCATTAAATTCAATTACAAAGACAGAGGATACAGGTAAACCAAAACAATCATCATTAT
CATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAA
CAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAATA
ATCCATTAGAAAAAAAACATGATCCACTTTCANAAACAATTGCAACAATGGGTGGATTAA
AATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATA
CATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATXXXXXXXXXXGCC
TATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGATGAATCTTTATTTA
GTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGCTTTATTAAAG
GCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACAAGTTAAATCA
ACTGAAGATAGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGTTGTAACTCCT
GGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAA
TATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATTATTATTACTT
TGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGAATCAAATGAT
CAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTATAATTCATTA
ATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAG
AAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAGATGTTGGTGAATTA
AATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAAAATTATACCA
TCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTATTGGAACTCTG
AATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATAAGAAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
iffstnlflykvislyvligt*KYLFRKYKMAERQSASSPTPSSPPQQQQQTPQQPPQYL
LNSKKNFKVKVLNGREVERHPLNSITKTEDTGKPKQSSLSSNASSLQSAAAAASSSTATT
DIDPLNNNNNNNTDIDPLNNPLEKKHDPLSXTIATMGGLKLIKENHLTNYVDENFMPWDT
LKPSILQQYTSDDSN---

---AYCFITIPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFK
QVKSTEDRTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQ
LLLLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPD
NLTQKKVGIICIDLINALLDVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAF
IGTLNLKWVRIFLINFHNNNKK
Translated Amino Acid sequence (All Frames) 
Frame A:
iffflqiyfstk*flymc*lahrniylenikwlkdnqhhhqlllhhhnnnnkhlnnhhni
y*iqkrilk*ky*mveklkdth*iqlqrqriqvnqnnhhyhqmqvhfnqqqqqhhhqqqq
qilih*ttiiiiiqilih*iih*kknmihfxkqlqqwvd*n**kkii*qimlmrilchgi
h*nhrffnniplmiq---

---AYCFITIPSIDDIFLKMNLYLVSSSVALQNQALSQADALLKAAITFIQEIPPILEFK
QVKSTEDRTISYVSDFISLLVVTPGHPESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQ
LLLLCSSWAQTSLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPD
NLTQKKVGIICIDLINALLDVGELNSKTASLIFNLYNMAKKIIPSTCFNEITYLKNTLAF
IGTLNLKWVRIFLINFHNNNKK

Frame B:
yfffykfislqsdfficvdwhieisi*ki*ng*ktisiitnsfftttttttntsttttif
tkfkkef*sksikw*rs*ktpikfnykdrgyr*tktiiiiikckftsisssssiiinsnn
ry*sikqq****yry*sik*sirkkt*stfxnncnngwikinkrksfnklc**efyamgy
ietidsstiyl**fk---

---piaslqfhqlmisf*r*ifi*slhlwlykikhslkpmly*rlpsllfkkslqswsln
klnqlkigqslmslilshf*l*llvilkvvlsi**rlfikslkningnqvqllnqnylfn
yyyfvllghklhyhiilkklnqminylqkiqsliqn*qnfiih*lkkfymi*if*kmnqi
i*hrkklvsfvli**mhy*mlvn*ivrqhh*fsiyiiwqrklyhqpvsmklhi*rillll
lel*i*ngsgyf**tftttirx

Frame C:
iffstnlflykvislyvligt*KYLFRKYKMAERQSASSPTPSSPPQQQQQTPQQPPQYL
LNSKKNFKVKVLNGREVERHPLNSITKTEDTGKPKQSSLSSNASSLQSAAAAASSSTATT
DIDPLNNNNNNNTDIDPLNNPLEKKHDPLSXTIATMGGLKLIKENHLTNYVDENFMPWDT
LKPSILQQYTSDDSN---

---lllhynsin**ylfkdeslfslficgftksstlssrcfikgchhfysrnpsnlgv*t
s*in*r*dnllcl*fyltfscnswss*kwsflfskgsl*sh*rismgikfnc*ikiiysi
iitlfflgtnfitisy*ks*ik*siiyrrsrv*yrinril*fin*rnfi*fksfer*tr*
fntekswyhly*fnkciircw*ik**dsiinfqfi*ygkenytinlfq*nyifkeyscfy
wnseskmgqdifnklsqqq*ex
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB830 (VHB830Q) /CSM/VH/VHB8-B/VHB830Q.Seq.d/                       1935   0.0
VHI864 (VHI864Q) /CSM/VH/VHI8-C/VHI864Q.Seq.d/                       1520   0.0
AHJ346 (AHJ346Q) /CSM/AH/AHJ3-B/AHJ346Q.Seq.d/                       1518   0.0
VHO612 (VHO612Q) /CSM/VH/VHO6-A/VHO612Q.Seq.d/                       1511   0.0
VHH623 (VHH623Q) /CSM/VH/VHH6-A/VHH623Q.Seq.d/                       1511   0.0
VHB181 (VHB181Q) /CSM/VH/VHB1-D/VHB181Q.Seq.d/                       1511   0.0
SHA683 (SHA683Q) /CSM/SH/SHA6-D/SHA683Q.Seq.d/                       1511   0.0
VHI487 (VHI487Q) /CSM/VH/VHI4-D/VHI487Q.Seq.d/                       1507   0.0
SHG577 (SHG577Q) /CSM/SH/SHG5-D/SHG577Q.Seq.d/                       1503   0.0
VHB123 (VHB123Q) /CSM/VH/VHB1-A/VHB123Q.Seq.d/                       1501   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   733   0.0    8
AF362371|AF362371.1 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds.   238   3e-58  1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           46   1e-05  4
BX247658|BX247658.1 Danio rerio genomic clone DKEY-231B6, genomic survey sequence.    44   2e-05  2
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    44   5e-05  8
AM469016|AM469016.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X097265.4, clone ENTAV 115.    46   2e-04  4
AX112153|AX112153.1 Sequence 5 from Patent WO0127287.              44   6e-04  4
AR302165|AR302165.1 Sequence 5 from patent US 6541202.             44   6e-04  4
AJ763136|AJ763136.1 Gerbera hybrid cv. 'Terra Regina' EST, clone G0000600020E11F1.    56   6e-04  2
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    44   6e-04  9
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK095078_1(AK095078|pid:none) Homo sapiens cDNA FLJ37759 fis, cl...   156   1e-36
BC007154_1(BC007154|pid:none) Mus musculus RIKEN cDNA 9030624J02...   155   2e-36
BC043674_1(BC043674|pid:none) Mus musculus RIKEN cDNA 9030624J02...   155   2e-36
(Q9H0L7) RecName: Full=UPF0505 protein C16orf62; AltName: Full=E...   154   5e-36
AL136744_1(AL136744|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0...   154   5e-36
AK024693_1(AK024693|pid:none) Homo sapiens cDNA: FLJ21040 fis, c...   154   5e-36
AF461052_1(AF461052|pid:none) Homo sapiens esophageal cancer ass...   154   5e-36
(Q5R8N4) RecName: Full=UPF0505 protein C16orf62 homolog;  &CR859...   154   7e-36
AK050302_1(AK050302|pid:none) Mus musculus adult male liver tumo...   154   9e-36
(Q9VHM2) RecName: Full=UPF0505 protein CG8202;  &AE014297_821(AE...   119   2e-25
protein update 2009. 6.27
PSORT 

 psg: 0.63  gvh: 0.27  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHB830 is mit
5' end seq. ID VHB830F
5' end seq. 
>VHB830F.Seq
ATATTTTTTTTTCTACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTG
GCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCAC
CAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATATT
TACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGAC
ACCCATTAAATTCAATTACAAAGACAGAGGATACAGGTAAACCAAAACAATCATCATTAT
CATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAA
CAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAATA
ATCCATTAGAAAAAAAACATGATCCACTTTCANAAACAATTGCAACAATGGGTGGATTAA
AATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATA
CATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATNNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID VHB830Z
3' end seq. 
>VHB830Z.Seq
NNNNNNNNNNGCCTATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGAT
GAATCTTTATTTAGTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGA
TGCTTTATTAAAGGCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAA
ACAAGTTAAATCAACTGAAGATAGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTT
AGTTGTAACTCCTGGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAA
AGTCATTAAAGAATATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCA
ATTATTATTACTTTGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGT
TGAATCAAATGATCAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATT
TTATAATTCATTAATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGA
TAATTTAACACAGAAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAGA
TGTTGGTGAATTAAATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAA
GAAAATTATACCATCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTT
TATTGGAACTCTGAATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAA
TAAGAAANA
Length of 3' end seq. 789
Connected seq. ID VHB830P
Connected seq. 
>VHB830P.Seq
ATATTTTTTTTTCTACAAATTTATTTCTCTACAAAGTGATTTCTTTATATGTGTTGATTG
GCACATAGAAATATCTATTTAGAAAATATAAAATGGCTGAAAGACAATCAGCATCATCAC
CAACTCCTTCTTCACCACCACAACAACAACAACAAACACCTCAACAACCACCACAATATT
TACTAAATTCAAAAAAGAATTTTAAAGTAAAAGTATTAAATGGTAGAGAAGTTGAAAGAC
ACCCATTAAATTCAATTACAAAGACAGAGGATACAGGTAAACCAAAACAATCATCATTAT
CATCAAATGCAAGTTCACTTCAATCAGCAGCAGCAGCAGCATCATCATCAACAGCAACAA
CAGATATTGATCCATTAAACAACAATAATAATAATAATACAGATATTGATCCATTAAATA
ATCCATTAGAAAAAAAACATGATCCACTTTCANAAACAATTGCAACAATGGGTGGATTAA
AATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCATGGGATA
CATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAAT----------GCC
TATTGCTTCATTACAATTCCATCAATTGATGATATCTTTTTAAAGATGAATCTTTATTTA
GTCTCTTCATCTGTGGCTTTACAAAATCAAGCACTCTCTCAAGCCGATGCTTTATTAAAG
GCTGCCATCACTTTTATTCAAGAAATCCCTCCAATCTTGGAGTTTAAACAAGTTAAATCA
ACTGAAGATAGGACAATCTCTTATGTCTCTGATTTTATCTCACTTTTAGTTGTAACTCCT
GGTCATCCTGAAAGTGGTCCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAA
TATCAATGGGAATCAAGTTCAACTGCTAAATCAAAATTATTTATTCAATTATTATTACTT
TGTTCTTCTTGGGCACAAACTTCATTACCATATCATATTGAAAAAGTTGAATCAAATGAT
CAATTATTTACAGAAGATCCAGAGTTTAATACAGAATTAACAGAATTTTATAATTCATTA
ATTAAAGAAATTTTATATGATTTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAG
AAAAAAGTTGGTATCATTTGTATTGATTTAATAAATGCATTATTAGATGTTGGTGAATTA
AATAGTAAGACAGCATCATTAATTTTCAATTTATATAATATGGCAAAGAAAATTATACCA
TCAACCTGTTTCAATGAAATTACATATTTAAAGAATACTCTTGCTTTTATTGGAACTCTG
AATCTAAAATGGGTCAGGATATTTTTAATAAACTTTCACAACAACAATAAGAAANA
Length of connected seq. 1366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -