VHB805 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB805
Library	VH (Link to library)
Clone ID	VHB805 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16305-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB8-A/VHB805Q.Seq.d/
Representative seq. ID	VHB805P (Link to Original site)
Representative DNA sequence	>VHB805 (VHB805Q) /CSM/VH/VHB8-A/VHB805Q.Seq.d/ AAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAAAACCAG TTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTGAAAAGA TTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAAAGATGG GTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAAATATGG CAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATATTGATG CAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATGGATTTT TATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCATTGGAC CAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTGCCAAAG AGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATCATGTTA TAAAGATTGCCAACGAGATTGGTTATCCAGTTATGGTTAAAGCATCAGCAGGTGGTGGTG GTAAAGGTXXXXXXXXXXAAATCGAACAACTCTCAATTTGTGCAGTTTTCTTACGTTTTG TTGAACAACACAAAAATTTGACAAACTCTTCAAATACAAATCGTACCTCTTCCATTTCAC CAGATATTCTTTACATTGCCAAGGTTGAAAATGTTCGTCACTCCATTCATTTCTATCCAC TCGATAATTCTGAAACTGACGCCGCTGCCAATGGTGCCAATGGTGATGATTCCTCAAGAT TCATGGTTCAATTCATCGATCAAGAGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAA ATTTAGTCGATGCAACTCCACAATTTATCAAATTAAACATTGGTGGTATCTCTCATCGTT TCCAAATTCACGATAAAACTTCCACATCCTACACCCTTCAATTCCATGGTTCAAAGATTC CAGTCACCGTTTTATCTCCAGAAGAAGATTTACTCTGCCAATACATGCCAGTTAAAAAAA CTGTTGACTCTTCAAACTCTTTAATCTCACCAATGCCTGGTACTATCCTCTCTTTGGCCG TTAATGTAGGTGATAAAGTTGTCCTTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAA TGCAAAATGTTCTCAGAGCTCCAAAAGATTGTGAAATTAAATCAATCAATGTTAAACCTG GTCAAGTCGTTTCTGTTGATGAAGTTTTAATNATTTTAAATAAAAATAAAAATAAAATAA AAATAAAAATAAAATAAAATAAAAAAATAAAATAAAAAAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	INTKKMNRLFKVQSVISKPVGWSSIRSFHSSSANYMFEKILIANRGEIACRVMETCKKMG IKTVAIHSDVDKNAKHVNMADEAICVGPAPTSESYLNIDAIVEAIKMTGAQAVHPGYGFL SENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIGEVDGMDHVI KIANEIGYPVMVKASAGGGGKG--- ---IEQLSICAVFLRFVEQHKNLTNSSNTNRTSSISPDILYIAKVENVRHSIHFYPLDNS ETDAAANGANGDDSSRFMVQFIDQEKDGQVIKEFELNLVDATPQFIKLNIGGISHRFQIH DKTSTSYTLQFHGSKIPVTVLSPEEDLLCQYMPVKKTVDSSNSLISPMPGTILSLAVNVG DKVVLGQELCIVEAMKMQNVLRAPKDCEIKSINVKPGQVVSVDEVLXILNKNKNKIKIKI Knkkikkk
Translated Amino Acid sequence (All Frames)	Frame A: kiqkktdylkfnlfqnqldgqalevfthlvqticlkrflqievklhvelwkhvkrw vlkqqfivmlirmlnmiwqmkqfvldqhqhqnhiilmqlrqlrqvhkqyiqvmdf yqriqdlkswrilvhsldqdhmlcmheirsnqnvlpkrqvlvlyqvtleksmvwiml rlptrlviqlwlkhqqvvvvk--- ---ksnnsqfvqfsyvllnntkiqtlqiqivplpfhqifftlprlkmfvtpfisihsii lkltplpmvpmvmipqdswfnssikrkmvkslrnlnismqlhnlsntlvvslivskf tiklphptpfnsmvqrfqspfylqkkiysantcqlkklltlqtlshqclvlsslwplm* viklslvknfvslkqkckmfselqkivklnqsmlnlvksfllmkfxfikikikkk nkikknkkn Frame B: nkykkneqiissicnfktswmvkhkfslicklyvkdfnckrncmsygnmkdg ynssnscectckygrsnlcwtstniriifeycncrgnddrctsstsrlwif irefkickrvgeywcnihwtriicyacirrdriktycqrgrccctrlhwrsrwygscy kdcqrdwlssygsisrwwwr--- ---nrttlnlcsfltfcttqkfdklfkyksylfhftryslhcqgkcsslhsflstrf nrrcqwcqwflkihgsihrsrerwsshgiikfsrcnstiyqikhwwylssfpns rnfhilhpsipwfkdsshrfisrrrftlpihasknclfklfnltnawyyplfgrcr scpwsrtlyrsnenakcsqsskrlninqctwssrfcsfnxfkkknknkn kikknkikk Frame C: INTKKMNRLFKVQSVISKPVGWSSIRSFHSSSANYMFEKILIANRGEIACRVMETCKKMG IKTVAIHSDVDKNAKHVNMADEAICVGPAPTSESYLNIDAIVEAIKMTGAQAVHPGYGFL SENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIGEVDGMDHVI KIANEIGYPVMVKASAGGGGKG--- ---IEQLSICAVFLRFVEQHKNLTNSSNTNRTSSISPDILYIAKVENVRHSIHFYPLDNS ETDAAANGANGDDSSRFMVQFIDQEKDGQVIKEFELNLVDATPQFIKLNIGGISHRFQIH DKTSTSYTLQFHGSKIPVTVLSPEEDLLCQYMPVKKTVDSSNSLISPMPGTILSLAVNVG DKVVLGQELCIVEAMKMQNVLRAPKDCEIKSINVKPGQVVSVDEVLXILNKNKNKIKIKI Knkkik*kk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB805 (VHB805Q) /CSM/VH/VHB8-A/VHB805Q.Seq.d/ 2426 0.0 VHC816 (VHC816Q) /CSM/VH/VHC8-A/VHC816Q.Seq.d/ 1277 0.0 VHD172 (VHD172Q) /CSM/VH/VHD1-C/VHD172Q.Seq.d/ 1275 0.0 VHK744 (VHK744Q) /CSM/VH/VHK7-B/VHK744Q.Seq.d/ 1269 0.0 VHQ468 (VHQ468Q) /CSM/VH/VHQ4-C/VHQ468Q.Seq.d/ 1267 0.0 VHC856 (VHC856Q) /CSM/VH/VHC8-C/VHC856Q.Seq.d/ 1265 0.0 VHB466 (VHB466Q) /CSM/VH/VHB4-C/VHB466Q.Seq.d/ 1265 0.0 AHN143 (AHN143Q) /CSM/AH/AHN1-B/AHN143Q.Seq.d/ 1265 0.0 AHA745 (AHA745Q) /CSM/AH/AHA7-B/AHA745Q.Seq.d/ 1261 0.0 VHP471 (VHP471Q) /CSM/VH/VHP4-C/VHP471Q.Seq.d/ 1259 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB170956\|AB170956.1 Macaca fascicularis brain cDNA clone: QorA-11423, similar to human propionyl Coenzyme A carboxylase, alpha polypeptide(PCCA), mRNA, RefSeq: NM_000282.1. 60 3e-20 5 CX984951\|CX984951.1 DOG_EST_P08F08 Canis familiaris testis cDNA Canis familiaris cDNA, mRNA sequence. 68 6e-17 3 BJ067051\|BJ067051.1 Xenopus laevis cDNA clone:XL089a23, 5' end, single read. 60 7e-16 3 X14608\|X14608.1 Human mRNA for propionyl-CoA carboxylase alpha-chain (EC 6.4.1.3). 50 8e-16 5 BC000140\|BC000140.2 Homo sapiens propionyl Coenzyme A carboxylase, alpha polypeptide, mRNA (cDNA clone MGC:5056 IMAGE:3048998), complete cds. 50 8e-16 5 AK225288\|AK225288.1 Homo sapiens mRNA for propionyl-Coenzyme A carboxylase, alpha polypeptide precursor variant, clone: HEP01581. 50 8e-16 5 AF385926\|AF385926.1 Homo sapiens propionyl-CoA carboxylase alpha subunit (PCCA) mRNA, complete cds; nuclear gene for mitochondrial product. 50 8e-16 5 AR339068\|AR339068.1 Sequence 559 from patent US 6569662. 50 9e-16 5 EJ953127\|EJ953127.1 1093018958145 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002962862 3', genomic survey sequence. 48 9e-16 5 CS071190\|CS071190.1 Sequence 353 from Patent WO2001032927. 50 9e-16 5
dna update	2007. 4.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value BX088652_4(BX088652\|pid:none) Zebrafish DNA sequence from clone ... 236 2e-60 BC006915_1(BC006915\|pid:none) Mus musculus propionyl-Coenzyme A ... 231 5e-59 AY046947_1(AY046947\|pid:none) Mus musculus propionyl CoA-carboxy... 231 5e-59 (Q91ZA3) RecName: Full=Propionyl-CoA carboxylase alpha chain, mi... 231 5e-59 M22631_1(M22631\|pid:none) Rat alpha-propionyl-CoA carboxylase mR... 229 2e-58 A34337(A34337;A30871)propionyl-CoA carboxylase (EC 6.4.1.3) alph... 229 2e-58 AB171076_1(AB171076\|pid:none) Macaca fascicularis brain cDNA clo... 224 4e-57 (P05165) RecName: Full=Propionyl-CoA carboxylase alpha chain, mi... 224 6e-57 AF385926_1(AF385926\|pid:none) Homo sapiens propionyl-CoA carboxy... 224 6e-57 CP000377_1869(CP000377\|pid:none) Silicibacter sp. TM1040, comple... 223 2e-56
protein update	2009. 6.27
PSORT	psg: 0.72 gvh: 0.47 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: mitochondrial 24.0 %: cytoplasmic 8.0 %: nuclear 4.0 %: cytoskeletal >> prediction for VHB805 is mit
5' end seq. ID	VHB805F
5' end seq.	>VHB805F.Seq AAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAAAACCAG TTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTGAAAAGA TTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAAAGATGG GTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAAATATGG CAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATATTGATG CAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATGGATTTT TATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCATTGGAC CAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTGCCAAAG AGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATCATGTTA TAAAGATTGCCAACGAGATTGGTTATCCAGTTATGGTTAAAGCATCAGCAGGTGGTGGTG GTAAAGGTNNNNNNNNNN
Length of 5' end seq.	618
3' end seq. ID	VHB805Z
3' end seq.	>VHB805Z.Seq NNNNNNNNNNAAATCGAACAACTCTCAATTTGTGCAGTTTTCTTACGTTTTGTTGAACAA CACAAAAATTTGACAAACTCTTCAAATACAAATCGTACCTCTTCCATTTCACCAGATATT CTTTACATTGCCAAGGTTGAAAATGTTCGTCACTCCATTCATTTCTATCCACTCGATAAT TCTGAAACTGACGCCGCTGCCAATGGTGCCAATGGTGATGATTCCTCAAGATTCATGGTT CAATTCATCGATCAAGAGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAAATTTAGTC GATGCAACTCCACAATTTATCAAATTAAACATTGGTGGTATCTCTCATCGTTTCCAAATT CACGATAAAACTTCCACATCCTACACCCTTCAATTCCATGGTTCAAAGATTCCAGTCACC GTTTTATCTCCAGAAGAAGATTTACTCTGCCAATACATGCCAGTTAAAAAAACTGTTGAC TCTTCAAACTCTTTAATCTCACCAATGCCTGGTACTATCCTCTCTTTGGCCGTTAATGTA GGTGATAAAGTTGTCCTTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAATGCAAAAT GTTCTCAGAGCTCCAAAAGATTGTGAAATTAAATCAATCAATGTTAAACCTGGTCAAGTC GTTTCTGTTGATGAAGTTTTAATNATTTTAAATAAAAATAAAAATAAAATAAAAATAAAA ATAAAATAAAATAAAAAAATAAAATAAAAAAAAT
Length of 3' end seq.	754
Connected seq. ID	VHB805P
Connected seq.	>VHB805P.Seq AAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAAAACCAG TTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTGAAAAGA TTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAAAGATGG GTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAAATATGG CAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATATTGATG CAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATGGATTTT TATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCATTGGAC CAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTGCCAAAG AGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATCATGTTA TAAAGATTGCCAACGAGATTGGTTATCCAGTTATGGTTAAAGCATCAGCAGGTGGTGGTG GTAAAGGT----------AAATCGAACAACTCTCAATTTGTGCAGTTTTCTTACGTTTTG TTGAACAACACAAAAATTTGACAAACTCTTCAAATACAAATCGTACCTCTTCCATTTCAC CAGATATTCTTTACATTGCCAAGGTTGAAAATGTTCGTCACTCCATTCATTTCTATCCAC TCGATAATTCTGAAACTGACGCCGCTGCCAATGGTGCCAATGGTGATGATTCCTCAAGAT TCATGGTTCAATTCATCGATCAAGAGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAA ATTTAGTCGATGCAACTCCACAATTTATCAAATTAAACATTGGTGGTATCTCTCATCGTT TCCAAATTCACGATAAAACTTCCACATCCTACACCCTTCAATTCCATGGTTCAAAGATTC CAGTCACCGTTTTATCTCCAGAAGAAGATTTACTCTGCCAATACATGCCAGTTAAAAAAA CTGTTGACTCTTCAAACTCTTTAATCTCACCAATGCCTGGTACTATCCTCTCTTTGGCCG TTAATGTAGGTGATAAAGTTGTCCTTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAA TGCAAAATGTTCTCAGAGCTCCAAAAGATTGTGAAATTAAATCAATCAATGTTAAACCTG GTCAAGTCGTTTCTGTTGATGAAGTTTTAATNATTTTAAATAAAAATAAAAATAAAATAA AAATAAAAATAAAATAAAATAAAAAAATAAAATAAAAAAAAT
Length of connected seq.	1352
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas