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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB796
Library VH
(Link to library)
Clone ID VHB796
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16269-1
Original site URL
Representative seq. ID VHB796E
(Link to Original site)
Representative DNA sequence 
>VHB796 (VHB796Q) /CSM/VH/VHB7-D/VHB796Q.Seq.d/
ATTTTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGA
TGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCG
TCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGG
TGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGT
CGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGG
TAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCG
TAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGT
CCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGT
CATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAA
GAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGG
TGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTC
TGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGT
CTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTG
GACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGC
TCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACT
CGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCC
AACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAA
CCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAA
AGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAAT
TTTTAAATAGATT
sequence update 2002.10.27
Translated Amino Acid sequence 
ffrnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYG
AAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNR
KVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLK
KINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANV
SRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRL
VNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIK
VSKKNQLRAKLVAATFNQ*ifk*i
Translated Amino Acid sequence (All Frames) 
Frame A:
ifqksshikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecssslw
ccsirw*tnlc*imgywsccrsysscsrfrytpfrsrclr*hv*rwsyvwskqdletles
*s*rqpkeircclsfsclscpsprygswsqnqwyq*spishcqrir*hppknqscr*iik
enqrlr*chqshrlqtyscwcw*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqr
lktqlikistrwslr*ihhld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqt
rql**npscr*sqqsrrqtsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikryq
s*qkesiks*iscchfqpinf*id


Frame B:
ffrnhht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYG
AAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNR
KVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLK
KINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANV
SRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRL
VNSDEIQAAVRASKVVVKRPTAPVRRSNPLKNLRAMIKLNPAAVSTRRTQVKSLKSKGIK
VSKKNQLRAKLVAATFNQ*ifk*i


Frame C:
fseiithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmv
llhtlvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgiv
kltstkrdtllsql*lpqlsqpslwlvvtesmvsmksh*slptnpltpskkpklplny*r
kstptlmspksstpnifvlvlvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklpts
qdsty*n*hqvvt*vdsssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsds
stlmksklplepaksssnvqlpqfvvlth*rtyvl*ln*tqppsqpvvlklnh*nqkvsk
lakrin*eln*llplstnkflnr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB796 (VHB796Q) /CSM/VH/VHB7-D/VHB796Q.Seq.d/                       2286   0.0
CHC407 (CHC407Q) /CSM/CH/CHC4-A/CHC407Q.Seq.d/                       2284   0.0
VFL490 (VFL490Q) /CSM/VF/VFL4-D/VFL490Q.Seq.d/                       2276   0.0
VFF345 (VFF345Q) /CSM/VF/VFF3-B/VFF345Q.Seq.d/                       2276   0.0
VFD440 (VFD440Q) /CSM/VF/VFD4-B/VFD440Q.Seq.d/                       2276   0.0
VFN437 (VFN437Q) /CSM/VF/VFN4-B/VFN437Q.Seq.d/                       2272   0.0
VFL284 (VFL284Q) /CSM/VF/VFL2-D/VFL284Q.Seq.d/                       2272   0.0
VFF742 (VFF742Q) /CSM/VF/VFF7-B/VFF742Q.Seq.d/                       2272   0.0
VFF442 (VFF442Q) /CSM/VF/VFF4-B/VFF442Q.Seq.d/                       2272   0.0
VFC722 (VFC722Q) /CSM/VF/VFC7-A/VFC722Q.Seq.d/                       2272   0.0
own update 2002.12.23
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  2194   0.0    1
DY893015|DY893015.1 CeleSEQ12172 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ12172, mRNA sequence.   153   8e-53  5
DY887736|DY887736.1 CeleSEQ4359 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ4359, mRNA sequence.   153   9e-53  5
DY892419|DY892419.1 CeleSEQ10644 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ10644, mRNA sequence.   121   3e-44  5
DY886865|DY886865.1 CeleSEQ2685 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ2685, mRNA sequence.   121   4e-44  5
DY891915|DY891915.1 CeleSEQ8670 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ8670, mRNA sequence.   153   7e-42  4
EE010259|EE010259.1 ROE00004409 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence.   105   1e-39  5
EE008636|EE008636.1 ROE00004162 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence.   105   2e-39  4
EE010144|EE010144.1 ROE00005275 Rhizopus oryzae Company Rhizopus oryzae cDNA, mRNA sequence.   105   2e-39  4
DY888598|DY888598.1 CeleSEQ5742 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ5742, mRNA sequence.   103   2e-37  4
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   379   e-104
CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...   369   e-100
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   365   1e-99
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ...   365   2e-99
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   363   8e-99
(Q9SF40) RecName: Full=60S ribosomal protein L4-1;          Shor...   362   2e-98
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   361   3e-98
(P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full...   360   4e-98
AK117624_1(AK117624|pid:none) Arabidopsis thaliana At5g02870 mRN...   358   2e-97
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   357   4e-97
protein update 2009. 7.11
PSORT 

 psg: 0.76  gvh: 0.36  alm: 0.27  top: 0.23  tms: 0.07  mit: 0.38  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum

>> prediction for VHB796 is mit
5' end seq. ID VHB796F
5' end seq. 
>VHB796F.Seq
ATTTTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGA
TGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCG
TCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGG
TGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGT
CGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGG
TAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCG
TAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGT
CCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGT
CATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAA
GAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGG
TGCTGGTAAAGCAAGAAANNNNNNNNNN
Length of 5' end seq. 628
3' end seq. ID VHB796Z
3' end seq. 
>VHB796Z.Seq
NNNNNNNNNNGCTGTCCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAA
TGAAGTCCCATTAGTCATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGC
CGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAA
ACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCC
ATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGT
TGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGG
TAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTT
TGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGC
TGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGT
CGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGC
TATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAA
ATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCAC
TTTCAACCAATAAATTTTTAAATAGATT
Length of 3' end seq. 748
Connected seq. ID VHB796P
Connected seq. 
>VHB796P.Seq
ATTTTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGA
TGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCG
TCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGG
TGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGT
CGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGG
TAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCG
TAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGT
CCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGT
CATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAA
GAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGG
TGCTGGTAAAGCAAGAAA----------GCTGTCCCAGCCCTCGTTATGGCTCGTGGTCA
CAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCGTTGACACCCT
CCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGATGTCAC
CAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTA
CAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTT
ACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAATTAGC
ACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAATTAGA
CTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTCCCACG
TCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGC
CGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCC
ATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGTCGTAC
TCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGC
TAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGATT
Length of connected seq. 1356
Full length Seq ID VHB796E
Full length Seq. 
>VHB796E.Seq
ATTTTTCAGAAATCATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGA
TGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCG
TCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGG
TGCTGCTCCATACGCTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGT
CGCTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGG
TAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCG
TAAAGTTAACGTCAACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGT
CCCAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGT
CATTGCCAACGAATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAA
GAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGG
TGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTC
TGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGT
CTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTG
GACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGC
TCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATTGTCAGACT
CGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCC
AACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAA
CCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAA
AGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAAT
TTTTAAATAGATT
Length of full length seq. 1153