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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB793
Library VH
(Link to library)
Clone ID VHB793
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16195-1
Original site URL
Representative seq. ID VHB793P
(Link to Original site)
Representative DNA sequence 
>VHB793 (VHB793Q) /CSM/VH/VHB7-D/VHB793Q.Seq.d/
CTCAACTGTAATAAATATCATTATATTTTTCAATTTCAATAAAATTATAAAATTAAAATT
ATCCATTGTAAAATTATAAAACTATAAATTAGATCCAAATTTTTTTGTTTTTTTCAATTT
CAAATTAAAACATTCATTTCCAAAACAAAAAAAAAAXXXXXXXXXXAACNAAAAAAAAAA
AAATANATAAAATATATAAAATAAATAAATAAATTAAATATATAAAATGTTATTAAAATT
AATTTTAATTCTTTGCTTTTTAGTAACCCTTTCATTAAGTGTAAAAGTTGATTCAGCAGA
TCCAGCATTATTCACACAAGGACCAACTATTGCTAGTGGTGGTACAGGTAATACTGGCGC
AAATCCATGCTATGGACATGATGATGAAGATGGTTCAAAAGATCCAGCAATGTTTACACA
AGGTCCAGTTTCAAGTGGAAGCGGTAGTGGTAGCGGTGGTTATTGCCCACATCACAAAAA
TCGTGCTCAAGAAGGTGGTAAAAAAGATACAACCAAAGAACAACCAAAAGAAAACAATAA
TAATAAAAATTTAGGTCGTCATTCATCAAGTGGTTCAGGTTCAGGTTCAGGTTCAGGTTG
TGGTGTTACCGGTGATACTGGTACAGGTTCAGGCAGAACTACCGCTCCAGTTAATGATGG
TGTTACATACAAATCCTCAAATGTTAAAGAAACTGANCAATACA
sequence update 2002.10.25
Translated Amino Acid sequence 
stviniiiffnfnkiiklklsivkl*NYKLDPNFFVFFNFKLKHSFPKQKK---

---TKKKKIXKIYKINK*ikyikcy*n*f*ffaf**pfh*v*kliqqiqhyshkdqlllv
vvqvilaqihamdmmmkmvqkiqqclhkvqfqveavvvavviahitkivlkkvvkkiqpk
nnqkktiiiki*vvihqvvqvqvqvqvvvlpvilvqvqaelplqlmmvlhtnpqmlkklx
nt
Translated Amino Acid sequence (All Frames) 
Frame A:
lncnkyhyifqfq*nykikiihckiikl*irskffcffqfqiktfisktkkk---

---nxkkknx*ni*nk*in*iykmllklililcflvtlslsvkvdsadpalftqgptias
ggtgntganpcyghddedgskdpamftqgpvssgsgsgsggycphhknraqeggkkdttk
eqpkennnnknlgrhsssgsgsgsgsgcgvtgdtgtgsgrttapvndgvtykssnvketx
qy

Frame B:
stviniiiffnfnkiiklklsivkl*NYKLDPNFFVFFNFKLKHSFPKQKK---

---TKKKKIXKIYKINK*ikyikcy*n*f*ffaf**pfh*v*kliqqiqhyshkdqlllv
vvqvilaqihamdmmmkmvqkiqqclhkvqfqveavvvavviahitkivlkkvvkkiqpk
nnqkktiiiki*vvihqvvqvqvqvqvvvlpvilvqvqaelplqlmmvlhtnpqmlkklx
nt

Frame C:
ql**islyfsisikl*n*nypl*nyktin*iqiflffsisn*nihfqnkkk---

---xkkkkxikyik*inklni*nvikinfnsllfsnpfikcks*fsrssiihtrtnyc*w
wyr*ywrksmlwt***rwfkrssnvytrssfkwkr*w*rwllptsqkscsrrw*krynqr
ttkrkq***kfrssfikwfrfrfrfrlwcyr*ywyrfrqnyrss**wcyiqilkc*rn*x
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB793 (VHB793Q) /CSM/VH/VHB7-D/VHB793Q.Seq.d/                        908   0.0
FC-IC1154 (FC-IC1154Q) /CSM/FC-IC/FC-IC1154Q.Seq.d/                   549   e-155
FC-IC1155 (FC-IC1155Q) /CSM/FC-IC/FC-IC1155Q.Seq.d/                   545   e-154
FC-IC0163 (FC-IC0163Q) /CSM/FC-IC/FC-IC0163Q.Seq.d/                   545   e-154
FC-IC0161 (FC-IC0161Q) /CSM/FC-IC/FC-IC0161Q.Seq.d/                   545   e-154
FC-IC1068 (FC-IC1068Q) /CSM/FC-IC/FC-IC1068Q.Seq.d/                   539   e-152
FC-IC0474 (FC-IC0474Q) /CSM/FC-IC/FC-IC0474Q.Seq.d/                   507   e-143
FC-IC1666 (FC-IC1666Q) /CSM/FC-IC/FC-IC1666Q.Seq.d/                   331   8e-90
FC-IC0582 (FC-IC0582Q) /CSM/FC-IC/FC-IC0582Q.Seq.d/                   301   8e-81
FC-IC1658 (FC-IC1658Q) /CSM/FC-IC/FC-IC1658Q.Seq.d/                   264   2e-69
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   438   0.0    4
BW642065|BW642065.1 Dugesia ryukyuensis mRNA, clone: Dr_sW_023_C24, 5' mRNA sequence.    68   4e-07  1
EJ500390|EJ500390.1 1095403625319 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061005598837 5', genomic survey sequence.    66   4e-07  2
CT612730|CT612730.2 Danio rerio EST, clone ZF_mu_3f08 5'.          64   6e-06  1
CR855298|CR855298.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-150J12.    64   6e-06  1
BX160136|BX160136.1 Danio rerio genomic clone DKEY-150J12, genomic survey sequence.    64   6e-06  1
BX511100|BX511100.26 Zebrafish DNA sequence from clone CH211-57M13 in linkage group 12.    64   6e-06  1
AL954770|AL954770.9 Zebrafish DNA sequence from clone CH211-193A15.    52   2e-05  2
BW638281|BW638281.1 Dugesia ryukyuensis mRNA, clone: Dr_sW_011_C13, 5' mRNA sequence.    62   2e-05  1
DT123403|DT123403.1 JGI_ANNO8329.rev ANNO Pimephales promelas Whole (M) Pimephales promelas cDNA clone ANNO8329 3', mRNA sequence.    52   6e-05  2
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HP9) RecName: Full=Uncharacterized protein DDB_G0274485; Fla...   195   1e-48
protein update 2009. 2.24
PSORT 

 psg: 0.87  gvh: 0.36  alm: 0.56  top: 1.03  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.34  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic

>> prediction for VHB793 is nuc
5' end seq. ID VHB793F
5' end seq. 
>VHB793F.Seq
CTCAACTGTAATAAATATCATTATATTTTTCAATTTCAATAAAATTATAAAATTAAAATT
ATCCATTGTAAAATTATAAAACTATAAATTAGATCCAAATTTTTTTGTTTTTTTCAATTT
CAAATTAAAACATTCATTTCCAAAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 166
3' end seq. ID VHB793Z
3' end seq. 
>VHB793Z.Seq
NNNNNNNNNNAACNAAAAAAAAAAAAATANATAAAATATATAAAATAAATAAATAAATTA
AATATATAAAATGTTATTAAAATTAATTTTAATTCTTTGCTTTTTAGTAACCCTTTCATT
AAGTGTAAAAGTTGATTCAGCAGATCCAGCATTATTCACACAAGGACCAACTATTGCTAG
TGGTGGTACAGGTAATACTGGCGCAAATCCATGCTATGGACATGATGATGAAGATGGTTC
AAAAGATCCAGCAATGTTTACACAAGGTCCAGTTTCAAGTGGAAGCGGTAGTGGTAGCGG
TGGTTATTGCCCACATCACAAAAATCGTGCTCAAGAAGGTGGTAAAAAAGATACAACCAA
AGAACAACCAAAAGAAAACAATAATAATAAAAATTTAGGTCGTCATTCATCAAGTGGTTC
AGGTTCAGGTTCAGGTTCAGGTTGTGGTGTTACCGGTGATACTGGTACAGGTTCAGGCAG
AACTACCGCTCCAGTTAATGATGGTGTTACATACAAATCCTCAAATGTTAAAGAAACTGA
NCAATACA
Length of 3' end seq. 548
Connected seq. ID VHB793P
Connected seq. 
>VHB793P.Seq
CTCAACTGTAATAAATATCATTATATTTTTCAATTTCAATAAAATTATAAAATTAAAATT
ATCCATTGTAAAATTATAAAACTATAAATTAGATCCAAATTTTTTTGTTTTTTTCAATTT
CAAATTAAAACATTCATTTCCAAAACAAAAAAAAAA----------AACNAAAAAAAAAA
AAATANATAAAATATATAAAATAAATAAATAAATTAAATATATAAAATGTTATTAAAATT
AATTTTAATTCTTTGCTTTTTAGTAACCCTTTCATTAAGTGTAAAAGTTGATTCAGCAGA
TCCAGCATTATTCACACAAGGACCAACTATTGCTAGTGGTGGTACAGGTAATACTGGCGC
AAATCCATGCTATGGACATGATGATGAAGATGGTTCAAAAGATCCAGCAATGTTTACACA
AGGTCCAGTTTCAAGTGGAAGCGGTAGTGGTAGCGGTGGTTATTGCCCACATCACAAAAA
TCGTGCTCAAGAAGGTGGTAAAAAAGATACAACCAAAGAACAACCAAAAGAAAACAATAA
TAATAAAAATTTAGGTCGTCATTCATCAAGTGGTTCAGGTTCAGGTTCAGGTTCAGGTTG
TGGTGTTACCGGTGATACTGGTACAGGTTCAGGCAGAACTACCGCTCCAGTTAATGATGG
TGTTACATACAAATCCTCAAATGTTAAAGAAACTGANCAATACA
Length of connected seq. 694
Full length Seq ID -
Full length Seq. -
Length of full length seq. -