VHB787
Library VH
(Link to library)
Clone ID VHB787
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16363-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB787 (VHB787Q) /CSM/VH/VHB7-D/VHB787Q.Seq.d/
XXXXXXXXXXATTGAAAATCCAATTGTTTTAATTGCTGGTTTAGCAAATACTTATTCAGG
TTATATTGCAACATTTGAAGAGTTTCAAGTTCAAAGATATGAAGGTGCATCAACCGTTTT
TGGACCTCATACTTTAGGAGCATATCAACAAGAATTTGCAAATCTTGCACAATCAATTGT
AGATGGTAGTCAAGCTGATCCAGGAACATTCCCAAGAAATATGTCTGGTCANACACCATT
CTTTTTACCACCAGTCATTGTTGATGTAGCTCCAAAATTCGACGATTTCGGTGATATCTA
TACTGATGTCTCTACAACTACACCATATTCAATCAATCAAACTGTTACCGTCATTTTCTA
TGGTGCCAATCTTAGAAATAATTTCATGACTGAATCTTCTTTCCTCACTGTTGATCAATT
ACAATCTAATGGTCAATGGACTACAATTTTAAATGATGGTGATTGGGATACAAAATTATA
TTGGAAAATGCATGATTTAGGTTTTTCACTCATCACTGTTGATTGGACAATCTCTCCAAT
CACTCAACCAGGTACTTATAGAATAACTCATAGTGGTTATGCTAAGAAAAATCCATTCTC
TGATAATTTAACTTTTTATCAAGGTATTTCAAGTAATTTTAATGTTCAATAAAAATTAAA
ATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---ENPIVLIAGLANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFANLAQSIVD
GSQADPGTFPRNMSGXTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSINQTVTVIFYG
ANLRNNFMTESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLITVDWTISPIT
QPGTYRITHSGYAKKNPFSDNLTFYQGISSNFNVQ*klk


Translated Amino Acid sequence (All Frames)
Frame A:
---lkiqlf*llv*qiliqvilqhlksfkfkdmkvhqpfldlil*ehinknlqilhnql*
mvvkliqehsqeiclvxhhsfyhqsllm*lqnstisvisilmslqlhhiqsikllpsfsm
vpileiis*lnllssllinynlmvnglqf*mmvigiqnyigkcmi*vfhsslligqslqs
lnqvlie*livvmlrkihslii*lfikvfqvilmfnkn*n


Frame B:
---*ksncfncwfskylfrlycni*rvssski*rcinrfwtsyfrsistricksctincr
w*ss*srnipkkyvwsxtilfttshc*csskirrfr*yly*clynytifnqsncyrhflw
cqs*k*fhd*iffphc*siti*wsmdynfk*w*lgykiilena*frffthhc*ldnlsnh
stryl*nns*wlc*eksil**fnflsryfk*f*csikiki


Frame C:
---ENPIVLIAGLANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFANLAQSIVD
GSQADPGTFPRNMSGXTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSINQTVTVIFYG
ANLRNNFMTESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLITVDWTISPIT
QPGTYRITHSGYAKKNPFSDNLTFYQGISSNFNVQ*klk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHC573 (VHC573Q) /CSM/VH/VHC5-D/VHC573Q.Seq.d/ 1289 0.0
VHB787 (VHB787Q) /CSM/VH/VHB7-D/VHB787Q.Seq.d/ 1289 0.0
VSD672 (VSD672Q) /CSM/VS/VSD6-C/VSD672Q.Seq.d/ 1287 0.0
VHP543 (VHP543Q) /CSM/VH/VHP5-B/VHP543Q.Seq.d/ 1287 0.0
VHI396 (VHI396Q) /CSM/VH/VHI3-D/VHI396Q.Seq.d/ 1287 0.0
VHB761 (VHB761Q) /CSM/VH/VHB7-C/VHB761Q.Seq.d/ 1287 0.0
VFM574 (VFM574Q) /CSM/VF/VFM5-D/VFM574Q.Seq.d/ 1287 0.0
SFK788 (SFK788Q) /CSM/SF/SFK7-D/SFK788Q.Seq.d/ 1287 0.0
AHI486 (AHI486Q) /CSM/AH/AHI4-D/AHI486Q.Seq.d/ 1287 0.0
AHB843 (AHB843Q) /CSM/AH/AHB8-B/AHB843Q.Seq.d/ 1287 0.0

own update 2002.12.23
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U82513|U82513.1 Dictyostelium discoideum random slug cDNA25 protein (rsc25) mRNA, partial cds. 1287 0.0 1
AB121061|AB121061.1 Dictyostelium discoideum dcd2A mRNA for ceramidase, complete cds. 1287 0.0 1
BU801815|BU801815.1 SJF2DTD01 SJF Schistosoma japonicum cDNA, mRNA sequence. 48 0.32 1
BU718532|BU718532.1 SJM2CKE01 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 0.32 1
BU718309|BU718309.1 SJM2CHH09 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 0.32 1
AC165363|AC165363.1 Mus musculus chromosome 17 clone RP23-59N14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 48 0.32 1
AC165167|AC165167.3 Mus musculus BAC clone RP23-27M6 from chromosome 17, complete sequence. 48 0.32 1
AC122257|AC122257.4 Mus musculus chromosome 17 clone RP23-178I11, complete sequence. 48 0.32 1
DV363639|DV363639.1 NACAR32TR Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NACAR32, mRNA sequence. 46 1.3 1
DV363638|DV363638.1 NACAR32TF Aedes aegypti infected with Brugia Malayi Aedes aegypti cDNA clone NACAR32, mRNA sequence. 46 1.3 1
dna update 2007. 4.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U82513_1(U82513|pid:none) Dictyostelium discoideum random slug c... 439 e-122
(Q55G11) RecName: Full=Neutral ceramidase B; Short=N-CD... 324 2e-87
AC022464_28(AC022464|pid:none) Genomic sequence for Arabidopsis ... 157 3e-37
CP000777_2353(CP000777|pid:none) Leptospira biflexa serovar Pato... 152 6e-36
BC167651_1(BC167651|pid:none) Xenopus tropicalis hypothetical pr... 151 1e-35
AP002819_24(AP002819|pid:none) Oryza sativa Japonica Group genom... 150 2e-35
AK099625_1(AK099625|pid:none) Oryza sativa Japonica Group cDNA c... 150 2e-35
EU200974_1(EU200974|pid:none) Triticum aestivum neutral ceramida... 150 3e-35
AK301784_1(AK301784|pid:none) Homo sapiens cDNA FLJ51366 complet... 149 5e-35
AL450382_3(AL450382|pid:none) Human DNA sequence from clone RP11... 149 5e-35
protein update 2009. 6.27
PSORT

psg: 0.75 gvh: 0.57 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi

>> prediction for VHB787 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB787Z
3' end seq.
>VHB787Z.Seq
NNNNNNNNNNATTGAAAATCCAATTGTTTTAATTGCTGGTTTAGCAAATACTTATTCAGG
TTATATTGCAACATTTGAAGAGTTTCAAGTTCAAAGATATGAAGGTGCATCAACCGTTTT
TGGACCTCATACTTTAGGAGCATATCAACAAGAATTTGCAAATCTTGCACAATCAATTGT
AGATGGTAGTCAAGCTGATCCAGGAACATTCCCAAGAAATATGTCTGGTCANACACCATT
CTTTTTACCACCAGTCATTGTTGATGTAGCTCCAAAATTCGACGATTTCGGTGATATCTA
TACTGATGTCTCTACAACTACACCATATTCAATCAATCAAACTGTTACCGTCATTTTCTA
TGGTGCCAATCTTAGAAATAATTTCATGACTGAATCTTCTTTCCTCACTGTTGATCAATT
ACAATCTAATGGTCAATGGACTACAATTTTAAATGATGGTGATTGGGATACAAAATTATA
TTGGAAAATGCATGATTTAGGTTTTTCACTCATCACTGTTGATTGGACAATCTCTCCAAT
CACTCAACCAGGTACTTATAGAATAACTCATAGTGGTTATGCTAAGAAAAATCCATTCTC
TGATAATTTAACTTTTTATCAAGGTATTTCAAGTAATTTTAATGTTCAATAAAAATTAAA
ATT
Length of 3' end seq. 663
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -