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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB772
Library VH
(Link to library)
Clone ID VHB772
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15043-1
Original site URL
Representative seq. ID VHB772P
(Link to Original site)
Representative DNA sequence 
>VHB772 (VHB772Q) /CSM/VH/VHB7-C/VHB772Q.Seq.d/
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCCXXXXXXXXXXAATACGATGGCACTGACGTG
ACAGGCACNTCCTACCAATTGTTGACTATGACAAAGAAATTNTACCCAAAGATTAAACAA
AACACAGCATGCAAGCAAATGGTAGTCATTGAATTACCATCAACAACACAGTGTGTGGGT
TTGATTCATTCAATAGCTGAGACTAAGATGATAAGAGTTGAGTATCATTTACTTGTGAAT
TTGGATATCCCAAGTTGTGTTGACCTTCGTTTGAAATTACCAATTACCATAGTTCAACCA
GACCCAAAGTTTGAAACACTTCCAAATCCATTGACTGAAATTGGTAATTTACCACGTTAC
GTTAAAGATTGGTCAATTAAAAATTTCCATAGTTGGGTTCTATTTAAAAAACAATGTCCA
GATGTGATGGCTTTGAATCCGGAATTCTATCAATATAATCTCTCTGGCTCTGATTTAATG
CAACTTCCAACGGAAACCCTCTATTCAATATTCAAAGGAGCCGGTCCAAGGACTCAAGAA
TTGGTTAATGATTTACAATCTCAAATCTTTGAAATTAAATTGGTTAGAAATTTCCTTAAA
GAACTTCAACTTTCAAATTTAATAGATTACTTTGAAAAACAAACTATCACTTGGGATATT
CTATTACAATTAAATTATAATGAAATTTTTTCAATTACTGATATCACTATTGGTGATGCA
AAAAGAATATTTTTAAAGATTCAACAAATTCAATCTGAAAGACAAAAACAACAAGAACAA
CAAGAACAGCAAGTGTTTCAAACC
sequence update 2002.10.25
Translated Amino Acid sequence 
FHSIQIKMTQRSLKINIIEGKDLKGLDSGGVSDCYVKFKCGPISAKTEVIKKSTSPIWNY
MINIGNVEENTLLQFECFDWERIGNNRTMGKTQAFVSDLSSGAKRNLMDQWLRLDTKGFI
RISYEFTPPYPLETESTNSPNLSVVGNGSSSSSSLMYNPTPVYFKPIFLPTIPSETINNN
KSTTCHFLI---

---YDGTDVTGTSYQLLTMTKKXYPKIKQNTACKQMVVIELPSTTQCVGLIHSIAETKMI
RVEYHLLVNLDIPSCVDLRLKLPITIVQPDPKFETLPNPLTEIGNLPRYVKDWSIKNFHS
WVLFKKQCPDVMALNPEFYQYNLSGSDLMQLPTETLYSIFKGAGPRTQELVNDLQSQIFE
IKLVRNFLKELQLSNLIDYFEKQTITWDILLQLNYNEIFSITDITIGDAKRIFLKIQQIQ
SERQKQQEQQEQQVFQT
Translated Amino Acid sequence (All Frames) 
Frame A:
isfntnkndskkfkdkyy*r*rfkrir*wwc**llc*i*mwpnlsqnrsn*kinkpnlel
yd*ywkc*reyiiti*mf*lgenr***nygkntsic**fikwskkkfngsmvkiry*rih
*nfi*iystisirnrinqftkfisswkw******fnv*sntslf*tnfltnntirnnk**
*kynmsffns---

---ntmalt*qaxptnc*l*qrnxtqrlnktqhaskw*slnyhqqhsvwv*fiq*lrlr*
*elsiiyl*iwisqvvltfv*nyqlp*fnqtqslkhfqih*lklviyhvtlkigqlkisi
vgfylknnvqm*wl*irnsiniislali*cnfqrkpsiqyskepvqglknwlmiynlksl
klnwleislknfnfqi**itlknklslgifyyn*iimkffqllisllvmqkeyf*rfnkf
nlkdknnknnknskcfk

Frame B:
FHSIQIKMTQRSLKINIIEGKDLKGLDSGGVSDCYVKFKCGPISAKTEVIKKSTSPIWNY
MINIGNVEENTLLQFECFDWERIGNNRTMGKTQAFVSDLSSGAKRNLMDQWLRLDTKGFI
RISYEFTPPYPLETESTNSPNLSVVGNGSSSSSSLMYNPTPVYFKPIFLPTIPSETINNN
KSTTCHFLI---

---irwh*rdrhxlpivdydkeixpkd*tkhsmqangsh*itinntvcgfdsfns*d*dd
ks*vsftcefgypklc*psfeitnyhsstrpkv*ntsksid*nw*fttlr*rlvn*kfp*
lgsi*ktmsrcdgfesgilsi*slwl*fnatsngnplfniqrsrskdsrig**ftisnl*
n*ig*kfp*rtstfkfnrll*ktnyhlgysitikl**nffny*yhyw*ckknifkdstns
i*ktkttrttrtasvsn

Frame C:
fiqyk*k*lkev*r*illkvki*kd*ivvvlvivmlnlnvaqsqpkqk*lknqqaqfgii
*lilemlkrihyynlnvligre*viielwekhkhllviyqveqkei*wing*d*ilkdsl
efhmnllhhih*kqnqpihqiyq*lemvvvvvvv*ciiqhqfilnqfsyqqyhqkq*iii
kvqhvif*f---

---YDGTDVTGTSYQLLTMTKKXYPKIKQNTACKQMVVIELPSTTQCVGLIHSIAETKMI
RVEYHLLVNLDIPSCVDLRLKLPITIVQPDPKFETLPNPLTEIGNLPRYVKDWSIKNFHS
WVLFKKQCPDVMALNPEFYQYNLSGSDLMQLPTETLYSIFKGAGPRTQELVNDLQSQIFE
IKLVRNFLKELQLSNLIDYFEKQTITWDILLQLNYNEIFSITDITIGDAKRIFLKIQQIQ
SERQKQQEQQEQQVFQT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB772 (VHB772Q) /CSM/VH/VHB7-C/VHB772Q.Seq.d/                       1675   0.0
VFD268 (VFD268Q) /CSM/VF/VFD2-C/VFD268Q.Seq.d/                       1453   0.0
VFJ726 (VFJ726Q) /CSM/VF/VFJ7-B/VFJ726Q.Seq.d/                       1336   0.0
VFK545 (VFK545Q) /CSM/VF/VFK5-B/VFK545Q.Seq.d/                       1314   0.0
SSG219 (SSG219Q) /CSM/SS/SSG2-A/SSG219Q.Seq.d/                       1122   0.0
AHQ788 (AHQ788Q) /CSM/AH/AHQ7-D/AHQ788Q.Seq.d/                        906   0.0
VHF437 (VHF437Q) /CSM/VH/VHF4-B/VHF437Q.Seq.d/                        878   0.0
VFK842 (VFK842Q) /CSM/VF/VFK8-B/VFK842Q.Seq.d/                        870   0.0
SSC550 (SSC550Q) /CSM/SS/SSC5-C/SSC550Q.Seq.d/                        763   0.0
SLF546 (SLF546Q) /CSM/SL/SLF5-B/SLF546Q.Seq.d/                        573   e-162
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    52   4e-07  14
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   8e-06  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46   4e-05  17
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    44   0.001  5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   0.002  14
U20839|U20839.1 Streptococcus pyogenes M type 47 (emml) gene, partial cds.    56   0.003  1
U20835|U20835.1 Streptococcus pyogenes M type 60 (emml) gene, partial cds.    56   0.003  1
BX537352|BX537352.18 Mouse DNA sequence from clone RP24-410N21 on chromosome 4.    56   0.003  1
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.009  21
AM622757|AM622757.1 Entamoeba invadens IP1 GSS, clone inv106f11.q1k.    42   0.010  3
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CH0) RecName: Full=Arrestin domain-containing protein C;          470   e-131
AM410050_1(AM410050|pid:none) Physcomitrella patens partial NTMC...    68   7e-10
(Q03640) RecName: Full=Tricalbin-3;  &S48824(S48824) &Z46373_10(...    59   4e-07
FN357909_6(FN357909|pid:none) Schistosoma mansoni genome sequenc...    58   7e-07
AY337620_1(AY337620|pid:none) Schistosoma mansoni protein kinase...    58   7e-07
CU928168_700(CU928168|pid:none) Kluyveromyces thermotolerans str...    57   2e-06
AE016818_493(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    57   2e-06
AE013599_2510(AE013599|pid:none) Drosophila melanogaster chromos...    55   7e-06
X05279_1(X05279|pid:none) Drosophila melanogaster PKC gene exon ...    55   7e-06
AP008207_825(AP008207|pid:none) Oryza sativa (japonica cultivar-...    55   7e-06
protein update 2009. 6.27
PSORT 

 psg: 0.66  gvh: 0.36  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.67  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for VHB772 is nuc
5' end seq. ID VHB772F
5' end seq. 
>VHB772F.Seq
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCCNNNNNNNNNN
Length of 5' end seq. 580
3' end seq. ID VHB772Z
3' end seq. 
>VHB772Z.Seq
NNNNNNNNNNAATACGATGGCACTGACGTGACAGGCACNTCCTACCAATTGTTGACTATG
ACAAAGAAATTNTACCCAAAGATTAAACAAAACACAGCATGCAAGCAAATGGTAGTCATT
GAATTACCATCAACAACACAGTGTGTGGGTTTGATTCATTCAATAGCTGAGACTAAGATG
ATAAGAGTTGAGTATCATTTACTTGTGAATTTGGATATCCCAAGTTGTGTTGACCTTCGT
TTGAAATTACCAATTACCATAGTTCAACCAGACCCAAAGTTTGAAACACTTCCAAATCCA
TTGACTGAAATTGGTAATTTACCACGTTACGTTAAAGATTGGTCAATTAAAAATTTCCAT
AGTTGGGTTCTATTTAAAAAACAATGTCCAGATGTGATGGCTTTGAATCCGGAATTCTAT
CAATATAATCTCTCTGGCTCTGATTTAATGCAACTTCCAACGGAAACCCTCTATTCAATA
TTCAAAGGAGCCGGTCCAAGGACTCAAGAATTGGTTAATGATTTACAATCTCAAATCTTT
GAAATTAAATTGGTTAGAAATTTCCTTAAAGAACTTCAACTTTCAAATTTAATAGATTAC
TTTGAAAAACAAACTATCACTTGGGATATTCTATTACAATTAAATTATAATGAAATTTTT
TCAATTACTGATATCACTATTGGTGATGCAAAAAGAATATTTTTAAAGATTCAACAAATT
CAATCTGAAAGACAAAAACAACAAGAACAACAAGAACAGCAAGTGTTTCAAACC
Length of 3' end seq. 774
Connected seq. ID VHB772P
Connected seq. 
>VHB772P.Seq
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCC----------AATACGATGGCACTGACGTG
ACAGGCACNTCCTACCAATTGTTGACTATGACAAAGAAATTNTACCCAAAGATTAAACAA
AACACAGCATGCAAGCAAATGGTAGTCATTGAATTACCATCAACAACACAGTGTGTGGGT
TTGATTCATTCAATAGCTGAGACTAAGATGATAAGAGTTGAGTATCATTTACTTGTGAAT
TTGGATATCCCAAGTTGTGTTGACCTTCGTTTGAAATTACCAATTACCATAGTTCAACCA
GACCCAAAGTTTGAAACACTTCCAAATCCATTGACTGAAATTGGTAATTTACCACGTTAC
GTTAAAGATTGGTCAATTAAAAATTTCCATAGTTGGGTTCTATTTAAAAAACAATGTCCA
GATGTGATGGCTTTGAATCCGGAATTCTATCAATATAATCTCTCTGGCTCTGATTTAATG
CAACTTCCAACGGAAACCCTCTATTCAATATTCAAAGGAGCCGGTCCAAGGACTCAAGAA
TTGGTTAATGATTTACAATCTCAAATCTTTGAAATTAAATTGGTTAGAAATTTCCTTAAA
GAACTTCAACTTTCAAATTTAATAGATTACTTTGAAAAACAAACTATCACTTGGGATATT
CTATTACAATTAAATTATAATGAAATTTTTTCAATTACTGATATCACTATTGGTGATGCA
AAAAGAATATTTTTAAAGATTCAACAAATTCAATCTGAAAGACAAAAACAACAAGAACAA
CAAGAACAGCAAGTGTTTCAAACC
Length of connected seq. 1334
Full length Seq ID -
Full length Seq. -
Length of full length seq. -