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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB767
Library VH
(Link to library)
Clone ID VHB767
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11249-1|Contig-U12842-1
Original site URL
Representative seq. ID VHB767P
(Link to Original site)
Representative DNA sequence 
>VHB767 (VHB767Q) /CSM/VH/VHB7-C/VHB767Q.Seq.d/
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCAAATTGTA
ACCCAAAAGAATATTTTAATGGTACAATCATTCGTCTACCATTGAGAATATTTCCAAGTG
AAATCAAAXXXXXXXXXXTATTTACAACGGACCATCACTAAACCGCTTTCTCATTTTATA
CTCATAGCTTTCTTTACACGAGTGATCAAGTCTATGATCTCTTATTCAAATATTATGGTA
ATAAGTTGGCCAAACATTTAAAATTTTCTACATTACCATTAAACTTTAGACAATTAATTT
CATCAATTTGTAGAAATTATATAAATATTAGAGAAATTAAACTTTCAGATTTTATCACTA
GTCTCAACTCCATCAACAACCTCCAATTTTTAAGTGATAGTATAATAACAATTTGGAATT
GTATCGATGAATTAAAAAGAAAAGAAACTTTAGAATTATCTCATATCCAATCATTACAAA
TTATCCCATATAGATTAAGTCCAACTGAAACTGATGTCACTAGTTTTGATAAATCTTCAT
TGTTAATGTACAAATCAAATTTCTTACCAATTGAACCAATCTTAAACAAACTAAAAATCT
ATTTAATAAAAGAAGGACATCAAATCAATAGTTTATTAGATGGAAATGCTCAAATCCCAA
TTTTATTAGGCTATCTTCAAAGGGTAAATTTATCATTAGACTCAAAGGAAATCGATAAAT
TAAGAATATTTTTAGTTGAATCAATGTTCCAAATTTCTTTATCACAAGATTATACTTCAA
TTTTTTATAATTTACCAATTCACCCATGCATTGGAAATAGTAACCAAAAGTTTAGTAGTA
TTACAACCAGTAGTTACTGTGGGATTAGAAAAAATNATCAATANAAATTCCAGGATTAAA
ATTAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
f*RDKMPQNKSQTIKLSHFLRDNLLNYPESKIFRELIQNAEDARADTVIIKVDEGSYPNN
GLLISNDNQEIESSKELLGPSILIYNNATFQEHDWEGICQISQGSKKENLKSVGNFGLGW
NSVYHITDNPIVYSGNNVWFSDPNERMSGGLFFDLDDEDDYKKCFSFLEPFIQFKESNCN
PKEYFNGTIIRLPLRIFPSEIK---

---YLQRTITKPLSHFILIAFFTRVIKSMISYSNIMVISWPNI*nflhyh*tldn*fhqf
veii*ileklnfqilslvstpsttsnf*viv**qfgivsmn*kekkl*nylisnhyklsh
id*vqlklmslvlinlhc*ctnqisyqlnqs*tn*ksi**kkdiksivy*memlksqfy*
aifkg*iyh*tqrksin*eyf*lnqcskflyhkiilqffiiyqfthaleivtkslvvlqp
vvtvglekxinxnsrikink
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkeikcpkikvkq*nylif*eiifltiqnqkylen*fkmqkmleliqs**rlmkahiqi
mgc*fqmitkklkvqkny*vhqf*fiimqlfknmigkefvklvkvvkkki*kvlaisv*v
gtvfii*qiiqlfivvimfgsqiqtke*vvvysli*mtkmiirnvlvf*shsfnlknqiv
tqknilmvqsfvyh*eyfqvks---

---YLQRTITKPLSHFILIAFFTRVIKSMISYSNIMVISWPNI*nflhyh*tldn*fhqf
veii*ileklnfqilslvstpsttsnf*viv**qfgivsmn*kekkl*nylisnhyklsh
id*vqlklmslvlinlhc*ctnqisyqlnqs*tn*ksi**kkdiksivy*memlksqfy*
aifkg*iyh*tqrksin*eyf*lnqcskflyhkiilqffiiyqfthaleivtkslvvlqp
vvtvglekxinxnsrikink

Frame B:
flkr*napk*ksnnktisffkr*ss*lsrikni*ridskcrrcss*yshnkg**rlisk*
wvvnfk**prn*kfkriirsinfnl**cnfsrt*lgrnlsn*sr**krkfkkcwqfrfrl
eqclsynr*sncl*w**clvlrskrknewwfil*fr*rr*l*emf*ffraihsi*rikl*
pkrif*wynhsstienisk*nq---

---iyngpslnrflilys*lslhe*ssl*sliqilw**vgqtfkifyitikl*tinfinl
*klyky*rn*tfrfyh*sqlhqqppifk**ynnnlelyr*ikkkrnfriisypiitnypi
*iksn*n*ch*f**ifivnvqikfltn*tnlkqtknlfnkrrtsnq*firwkcsnpnfir
lsskgkfiirlkgnr*iknifs*invpnffitrlyfnfl*ftnspmhwk**pkv**yynq
*llwd*kkxsixipglkli

Frame C:
f*RDKMPQNKSQTIKLSHFLRDNLLNYPESKIFRELIQNAEDARADTVIIKVDEGSYPNN
GLLISNDNQEIESSKELLGPSILIYNNATFQEHDWEGICQISQGSKKENLKSVGNFGLGW
NSVYHITDNPIVYSGNNVWFSDPNERMSGGLFFDLDDEDDYKKCFSFLEPFIQFKESNCN
PKEYFNGTIIRLPLRIFPSEIK---

---fttdhh*tafsfythsflytsdqvydllfkyygnklakhlkfstlplnfrqlissic
rnyinireiklsdfitslnsinnlqflsdsiitiwncidelkrketlelshiqslqiipy
rlsptetdvtsfdkssllmyksnflpiepilnklkiylikeghqinslldgnaqipillg
ylqrvnlsldskeidklriflvesmfqislsqdytsifynlpihpcignsnqkfssitts
sycgirknxqxkfqd*n**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB767 (VHB767Q) /CSM/VH/VHB7-C/VHB767Q.Seq.d/                       2016   0.0
VHO809 (VHO809Q) /CSM/VH/VHO8-A/VHO809Q.Seq.d/                       1441   0.0
VHE123 (VHE123Q) /CSM/VH/VHE1-A/VHE123Q.Seq.d/                       1435   0.0
VHD239 (VHD239Q) /CSM/VH/VHD2-B/VHD239Q.Seq.d/                       1413   0.0
VHK810 (VHK810Q) /CSM/VH/VHK8-A/VHK810Q.Seq.d/                       1356   0.0
VHK791 (VHK791Q) /CSM/VH/VHK7-D/VHK791Q.Seq.d/                       1344   0.0
VFN211 (VFN211Q) /CSM/VF/VFN2-A/VFN211Q.Seq.d/                       1176   0.0
VHN647 (VHN647Q) /CSM/VH/VHN6-B/VHN647Q.Seq.d/                        628   e-179
VHC102 (VHC102Q) /CSM/VH/VHC1-A/VHC102Q.Seq.d/                        628   e-179
VHE271 (VHE271Q) /CSM/VH/VHE2-C/VHE271Q.Seq.d/                        601   e-170
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CU271466|CU271466.1 Equus caballus GSS, BAC clone CH241-426B21, SP6 end sequence.    36   0.006  3
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.010  26
CU054628|CU054628.1 Equus caballus GSS, BAC clone CH241-155P22, SP6 end sequence.    36   0.010  3
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.010  18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.011  22
EK418846|EK418846.1 1095515487410 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005872407 3', genomic survey sequence.    40   0.028  4
AC025306|AC025306.3 Homo sapiens clone RP11-24F7, WORKING DRAFT SEQUENCE, 20 unordered pieces.    52   0.043  1
ED245306|ED245306.1 AUAC-aaq90h10.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.    52   0.043  1
AL392089|AL392089.7 Human DNA sequence from clone RP11-31F19 on chromosome 9p24.1-24.3.    52   0.043  1
BX293980|BX293980.2 Mycoplasma mycoides subsp. mycoides SC str. PG1, complete genome.    34   0.058  20
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NZJ4) RecName: Full=Sacsin;  &AL157766_4(AL157766|pid:none)        111   7e-23
BC171956_1(BC171956|pid:none) Mus musculus sacsin, mRNA (cDNA cl...   109   3e-22
BC138482_1(BC138482|pid:none) Mus musculus sacsin, mRNA (cDNA cl...   108   3e-22
(Q9JLC8) RecName: Full=Sacsin;                                        108   3e-22
BC142916_1(BC142916|pid:none) Danio rerio hypothetical LOC555303...   107   1e-21
CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   106   2e-21
AB006708_10(AB006708|pid:none) Arabidopsis thaliana genomic DNA,...   100   1e-19
AL732351_6(AL732351|pid:none) Oryza sativa genomic DNA, chromoso...    92   6e-17
AL606457_18(AL606457|pid:none) Oryza sativa genomic DNA, chromos...    90   2e-16
CR749427_1(CR749427|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1...    76   3e-12
protein update 2009. 6.27
PSORT 

 psg: 0.68  gvh: 0.39  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHB767 is nuc
5' end seq. ID VHB767F
5' end seq. 
>VHB767F.Seq
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCAAATTGTA
ACCCAAAAGAATATTTTAATGGTACAATCATTCGTCTACCATTGAGAATATTTCCAAGTG
AAATCAAANNNNNNNNNN
Length of 5' end seq. 618
3' end seq. ID VHB767Z
3' end seq. 
>VHB767Z.Seq
NNNNNNNNNNTATTTACAACGGACCATCACTAAACCGCTTTCTCATTTTATACTCATAGC
TTTCTTTACACGAGTGATCAAGTCTATGATCTCTTATTCAAATATTATGGTAATAAGTTG
GCCAAACATTTAAAATTTTCTACATTACCATTAAACTTTAGACAATTAATTTCATCAATT
TGTAGAAATTATATAAATATTAGAGAAATTAAACTTTCAGATTTTATCACTAGTCTCAAC
TCCATCAACAACCTCCAATTTTTAAGTGATAGTATAATAACAATTTGGAATTGTATCGAT
GAATTAAAAAGAAAAGAAACTTTAGAATTATCTCATATCCAATCATTACAAATTATCCCA
TATAGATTAAGTCCAACTGAAACTGATGTCACTAGTTTTGATAAATCTTCATTGTTAATG
TACAAATCAAATTTCTTACCAATTGAACCAATCTTAAACAAACTAAAAATCTATTTAATA
AAAGAAGGACATCAAATCAATAGTTTATTAGATGGAAATGCTCAAATCCCAATTTTATTA
GGCTATCTTCAAAGGGTAAATTTATCATTAGACTCAAAGGAAATCGATAAATTAAGAATA
TTTTTAGTTGAATCAATGTTCCAAATTTCTTTATCACAAGATTATACTTCAATTTTTTAT
AATTTACCAATTCACCCATGCATTGGAAATAGTAACCAAAAGTTTAGTAGTATTACAACC
AGTAGTTACTGTGGGATTAGAAAAAATNATCAATANAAATTCCAGGATTAAAATTAATAA
A
Length of 3' end seq. 781
Connected seq. ID VHB767P
Connected seq. 
>VHB767P.Seq
ATTTTTAAAGAGATAAAATGCCCCAAAATAAAAGTCAAACAATAAAACTATCTCATTTTT
TAAGAGATAATCTTCTTAACTATCCAGAATCAAAAATATTTAGAGAATTGATTCAAAATG
CAGAAGATGCTCGAGCTGATACAGTCATAATAAAGGTTGATGAAGGCTCATATCCAAATA
ATGGGTTGTTAATTTCAAATGATAACCAAGAAATTGAAAGTTCAAAAGAATTATTAGGTC
CATCAATTTTAATTTATAATAATGCAACTTTTCAAGAACATGATTGGGAAGGAATTTGTC
AAATTAGTCAAGGTAGTAAAAAAGAAAATTTAAAAAGTGTTGGCAATTTCGGTTTAGGTT
GGAACAGTGTTTATCATATAACAGATAATCCAATTGTTTATAGTGGTAATAATGTTTGGT
TCTCAGATCCAAACGAAAGAATGAGTGGTGGTTTATTCTTTGATTTAGATGACGAAGATG
ATTATAAGAAATGTTTTAGTTTTTTAGAGCCATTCATTCAATTTAAAGAATCAAATTGTA
ACCCAAAAGAATATTTTAATGGTACAATCATTCGTCTACCATTGAGAATATTTCCAAGTG
AAATCAAA----------TATTTACAACGGACCATCACTAAACCGCTTTCTCATTTTATA
CTCATAGCTTTCTTTACACGAGTGATCAAGTCTATGATCTCTTATTCAAATATTATGGTA
ATAAGTTGGCCAAACATTTAAAATTTTCTACATTACCATTAAACTTTAGACAATTAATTT
CATCAATTTGTAGAAATTATATAAATATTAGAGAAATTAAACTTTCAGATTTTATCACTA
GTCTCAACTCCATCAACAACCTCCAATTTTTAAGTGATAGTATAATAACAATTTGGAATT
GTATCGATGAATTAAAAAGAAAAGAAACTTTAGAATTATCTCATATCCAATCATTACAAA
TTATCCCATATAGATTAAGTCCAACTGAAACTGATGTCACTAGTTTTGATAAATCTTCAT
TGTTAATGTACAAATCAAATTTCTTACCAATTGAACCAATCTTAAACAAACTAAAAATCT
ATTTAATAAAAGAAGGACATCAAATCAATAGTTTATTAGATGGAAATGCTCAAATCCCAA
TTTTATTAGGCTATCTTCAAAGGGTAAATTTATCATTAGACTCAAAGGAAATCGATAAAT
TAAGAATATTTTTAGTTGAATCAATGTTCCAAATTTCTTTATCACAAGATTATACTTCAA
TTTTTTATAATTTACCAATTCACCCATGCATTGGAAATAGTAACCAAAAGTTTAGTAGTA
TTACAACCAGTAGTTACTGTGGGATTAGAAAAAATNATCAATANAAATTCCAGGATTAAA
ATTAATAAA
Length of connected seq. 1379
Full length Seq ID -
Full length Seq. -
Length of full length seq. -