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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB757
Library VH
(Link to library)
Clone ID VHB757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHB757P
(Link to Original site)
Representative DNA sequence 
>VHB757 (VHB757Q) /CSM/VH/VHB7-C/VHB757Q.Seq.d/
ATATTATTTTTCTTCCTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGA
TTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATA
CTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAA
ATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAA
CAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATG
GTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATG
GAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTT
TTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGNGATTGCAC
GTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCAT
CCAATGGTGATGTTTTATTCACACCXXXXXXXXXXTNGTNTTGGTGGTNATTGGNTTCTA
CGTTTTTAAGAATCCNNGATTTCAAACAAAGTATTATTAANAATGGTTGGTTTTTCAAAG
GNCGGTCCAAAATATAGTGTTATCGG
sequence update 2002.10.25
Translated Amino Acid sequence 
IIFLPICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTN
KDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYG
KTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLXIARSDNFILISEDFGLTWNNASS
NGDVLFT---

---XXWWXLXSTFLRIXDFKQSIIXNGWFFKGRSKI*cyr
Translated Amino Acid sequence (All Frames) 
Frame A:
ilffflsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv*xlhvpiisf*lvkilv*hgtmhh
pmvmfysh---

---XXWWXLXSTFLRIXDFKQSIIXNGWFFKGRSKI*cyr

Frame B:
yyfssylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfxdctfr*fhfn**rfwfnmeqcii
qw*cfiht---

---xxggxwxlrf*esxisnkvllxmvgfskxgpkysvi

Frame C:
IIFLPICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLYTN
KDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPSYG
KTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLXIARSDNFILISEDFGLTWNNASS
NGDVLFT---

---vlvvigfyvfknpxfqtkyy*xwlvfqrxvqnivls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB757 (VHB757Q) /CSM/VH/VHB7-C/VHB757Q.Seq.d/                       1247   0.0
VHP112 (VHP112Q) /CSM/VH/VHP1-A/VHP112Q.Seq.d/                       1114   0.0
VHL878 (VHL878Q) /CSM/VH/VHL8-D/VHL878Q.Seq.d/                       1114   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                       1114   0.0
VHI185 (VHI185Q) /CSM/VH/VHI1-D/VHI185Q.Seq.d/                       1114   0.0
VHB186 (VHB186Q) /CSM/VH/VHB1-D/VHB186Q.Seq.d/                       1114   0.0
VHA706 (VHA706Q) /CSM/VH/VHA7-A/VHA706Q.Seq.d/                       1114   0.0
VHP145 (VHP145Q) /CSM/VH/VHP1-B/VHP145Q.Seq.d/                       1110   0.0
VHD134 (VHD134Q) /CSM/VH/VHD1-B/VHD134Q.Seq.d/                       1110   0.0
VHO439 (VHO439Q) /CSM/VH/VHO4-B/VHO439Q.Seq.d/                       1108   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY863213|AY863213.1 Smittium culisetae mitochondrion, complete genome.    36   0.016  5
AX345935|AX345935.1 Sequence 1006 from Patent WO0200928.           38   0.083  3
AM631444|AM631444.1 Entamoeba dispar GSS, clone dispar68h08.p1k.    50   0.083  1
AC148840|AC148840.2 Pongo pygmaeus clone CH253-47K14, WORKING DRAFT SEQUENCE, 6 ordered pieces.    40   0.12   3
AC165593|AC165593.2 Bos taurus clone CH240-169M11, *** SEQUENCING IN PROGRESS ***, 33 unordered pieces.    40   0.17   3
AC146647|AC146647.2 Otolemur garnettii clone CH256-554N10, WORKING DRAFT SEQUENCE, 7 ordered pieces.    42   0.24   3
DX550927|DX550927.1 GH_MBb0069E02r GH_MBb Gossypium hirsutum genomic clone GH_MBb0069E02r, genomic survey sequence.    38   0.31   2
AC164472|AC164472.2 Bos taurus clone CH240-152D3, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.    48   0.33   1
AC164815|AC164815.2 Bos taurus clone CH240-155P22, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    42   0.34   4
AV497237|AV497237.1 Mus musculus cDNA, Abe mouse ES cell cDNA library, clone:19991202EK02A05.    42   0.48   2
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000512_3608(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...    36   0.95
CP001390_1563(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    35   1.6
EU719193_1(EU719193|pid:none) Aspergillus niger strain CBS 120.4...    35   2.8
CP000447_3980(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    34   3.6
CU466930_788(CU466930|pid:none) Candidatus Cloacamonas acidamino...    34   4.7
CP001032_2894(CP001032|pid:none) Opitutus terrae PB90-1, complet...    33   8.0
CU928158_504(CU928158|pid:none) Escherichia fergusonii ATCC 3546...    33   8.0
AB308054_1(AB308054|pid:none) Phanerochaete chrysosporium xgh74B...    33   8.0
protein update 2009. 6.27
PSORT 

 psg: 0.65  gvh: 0.69  alm: 0.15  top: 0.47  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.50  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHB757 is cyt
5' end seq. ID VHB757F
5' end seq. 
>VHB757F.Seq
ATATTATTTTTCTTCCTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGA
TTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATA
CTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAA
ATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAA
CAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATG
GTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATG
GAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTT
TTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGNGATTGCAC
GTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCAT
CCAATGGTGATGTTTTATTCACACCNNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID VHB757Z
3' end seq. 
>VHB757Z.Seq
NNNNNNNNNNTNGTNTTGGTGGTNATTGGNTTCTACGTTTTTAAGAATCCNNGATTTCAA
ACAAAGTATTATTAANAATGGTTGGTTTTTCAAAGGNCGGTCCAAAATATAGTGTTATCG
G
Length of 3' end seq. 121
Connected seq. ID VHB757P
Connected seq. 
>VHB757P.Seq
ATATTATTTTTCTTCCTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAGA
TTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAATA
CTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACAA
ATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCAA
CAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTATG
GTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTATG
GAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTTT
TTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGNGATTGCAC
GTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCAT
CCAATGGTGATGTTTTATTCACACC----------TNGTNTTGGTGGTNATTGGNTTCTA
CGTTTTTAAGAATCCNNGATTTCAAACAAAGTATTATTAANAATGGTTGGTTTTTCAAAG
GNCGGTCCAAAATATAGTGTTATCGG
Length of connected seq. 676
Full length Seq ID -
Full length Seq. -
Length of full length seq. -