NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB751
Library VH
(Link to library)
Clone ID VHB751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID VHB751P
(Link to Original site)
Representative DNA sequence 
>VHB751 (VHB751Q) /CSM/VH/VHB7-C/VHB751Q.Seq.d/
TTCATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATC
TAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGT
TAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACA
NGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATC
AACTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGG
TGCCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAAT
TGTAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATC
TTTAANGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGA
AGTTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGG
TTTAXXXXXXXXXXCGATGTACAAAAGATCCTCCNAGAATATGAATCACCTTCAAGATAT
TATTGCCATTTTAGGTATGGATGATTTATCTGAAGACCAAAAAGCAGNCTGTATTCCGTG
CTCGTAAGATTCAACGTTTCTTATCACAACCATTNGAAGTTGCCCACGCCTTCACCAATA
TGGAAGGTAGATTCGTTAAACTCTCCGACTCTATCAAAGCCTTCAAAGGTATCCTCGAAG
GTAAATACGATCATNTCCCAGAAGCTGCCTTCTATATGGTTGGTGGTATCGAANATGTCG
AAATTAAAGCTGCTAAACTCTTAGAATCCGCTGGTAAAGAAGAAAAGAAAACCACCACTA
CCTCCACCANTGGTCAAGTCAAAGAAGAAACTGTCAGAGAAAAAGTTACCAGACTCGTCG
ATGAAGCTTACAATGCTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAACTGCTCACC
TTGAAGAATTACGTGCTCAATANAAAAGAACTTTGAATCTGAAATCAGTCAATTAGAAGT
TTTATTAAAAAAATAAATTAACTTCCAAAACTAAAAATAATTATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
s*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSX
EKEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALI
VDDFQAENVEKVIEDLNNPSLXGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDG
L---

---MYKRSSXNMNHLQDIIAILGMDDLSEDQKAXCIPCS*dstflittixscprlhqygr
*ir*tlrlyqslqryprr*irsxprscllygwwyrxcrn*sc*tlrirw*rrkenhhylh
xwssqrrncqrksyqtrr*slqc*sqeikgiwclncsp*ritcsixknfeseisqlevll
kk*infqn*k*ly
Translated Amino Acid sequence (All Frames) 
Frame A:
fivliitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststknft
xkril*ke*esfr*rik*rin*s*lfkikrksrcctssnwcrr*cllptr*itihq*cfn
cr*fps*kcrksn*rs*qpifxg*nrfqqcsnfkh*isfrscstfr*wyrslcrsryy*w
f---

---rctkdppri*itfkillpf*vwmiylktkkqxvfrarkiqrflsqpxevahaftnme
grfvklsdsikafkgilegkydhxpeaafymvggiexveikaakllesagkeekktttts
txgqvkeetvrekvtrlvdeaynakvkklkeygastahleelraqxkrtlnlksvn*kfy
*knkltsktknnyi

Frame B:
s*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSX
EKEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALI
VDDFQAENVEKVIEDLNNPSLXGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDG
L---

---dvqkilxeyespsryychfryg*fi*rpksxlysvlvrfnvsyhnhxklptpspiwk
vdslnsptlskpskvsskvntixsqklpsiwlvvsxmsklkllns*nplvkkkrkpplpp
pxvkskkklsekklpdssmkltmlksrn*rnmvpqlltlknyvlnxkel*i*nqsirsfi
kkin*lpklkiii

Frame C:
hspdyyiflkqkcllledylktshklaklqlkpqfvlsqlevskllqltkpqhqhqklhx
kkntlkrirvf*iknqmknqlkliiqn*tkikvlyik*lvpslmftshtvnyhtsmml*l
*misklkmskk*lkiltthl*xvksistmfqfqtln*f*kllni*vmvsfvvslsillmv
---

---MYKRSSXNMNHLQDIIAILGMDDLSEDQKAXCIPCS*dstflittixscprlhqygr
*ir*tlrlyqslqryprr*irsxprscllygwwyrxcrn*sc*tlrirw*rrkenhhylh
xwssqrrncqrksyqtrr*slqc*sqeikgiwclncsp*ritcsixknfeseisqlevll
kk*infqn*k*ly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB751 (VHB751Q) /CSM/VH/VHB7-C/VHB751Q.Seq.d/                       2079   0.0
VHN470 (VHN470Q) /CSM/VH/VHN4-C/VHN470Q.Seq.d/                       1066   0.0
VHK118 (VHK118Q) /CSM/VH/VHK1-A/VHK118Q.Seq.d/                       1066   0.0
VHI585 (VHI585Q) /CSM/VH/VHI5-D/VHI585Q.Seq.d/                       1066   0.0
VHF364 (VHF364Q) /CSM/VH/VHF3-C/VHF364Q.Seq.d/                       1066   0.0
VHE453 (VHE453Q) /CSM/VH/VHE4-C/VHE453Q.Seq.d/                       1066   0.0
VHE330 (VHE330Q) /CSM/VH/VHE3-B/VHE330Q.Seq.d/                       1066   0.0
VFN313 (VFN313Q) /CSM/VF/VFN3-A/VFN313Q.Seq.d/                       1066   0.0
VFK204 (VFK204Q) /CSM/VF/VFK2-A/VFK204Q.Seq.d/                       1066   0.0
VFI720 (VFI720Q) /CSM/VF/VFI7-A/VFI720Q.Seq.d/                       1066   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DY888615|DY888615.1 CeleSEQ5771 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ5771, mRNA sequence.    78   2e-20  2
DY890491|DY890491.1 CeleSEQ9513 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9513, mRNA sequence.    78   2e-20  2
DY895613|DY895613.1 CeleSEQ15482 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15482, mRNA sequence.    78   2e-20  2
DY895639|DY895639.1 CeleSEQ15515 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15515, mRNA sequence.    78   2e-20  2
AB104883|AB104883.1 Zygosaccharomyces rouxii ZrATP2 gene for mitochondrial ATPase beta-subunit, complete cds.    58   3e-19  4
AR548202|AR548202.1 Sequence 3333 from patent US 6747137.          56   4e-19  5
AX109738|AX109738.1 Sequence 471 from Patent WO0123604.            68   3e-18  2
AX109755|AX109755.1 Sequence 488 from Patent WO0123604.            66   2e-17  3
AX109756|AX109756.1 Sequence 489 from Patent WO0123604.            66   2e-17  3
EK399625|EK399625.1 1095469535844 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005861865 3', genomic survey sequence.    62   1e-16  3
dna update 2007. 4.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN102155_1(GN102155|pid:none) Sequence 6936 from Patent WO200903...   100   2e-23
(Q3YS09) RecName: Full=ATP synthase subunit beta;          EC=3....    97   5e-23
AE016815_382(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    97   3e-22
GN102557_1(GN102557|pid:none) Sequence 7338 from Patent WO200903...    92   3e-22
(P49376) RecName: Full=ATP synthase subunit beta, mitochondrial;...    97   4e-22
(Q73IG3) RecName: Full=ATP synthase subunit beta;          EC=3....    96   4e-22
CP001391_156(CP001391|pid:none) Wolbachia sp. wRi, complete geno...    96   4e-22
FN392320_1159(FN392320|pid:none) Pichia pastoris GS115 chromosom...    96   6e-22
(B3CN17) RecName: Full=ATP synthase subunit beta;          EC=3....    96   6e-22
CP001016_215(CP001016|pid:none) Beijerinckia indica subsp. indic...    95   1e-21
protein update 2009. 6.27
PSORT 

 psg: 0.65  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear

>> prediction for VHB751 is mit
5' end seq. ID VHB751F
5' end seq. 
>VHB751F.Seq
TTCATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATC
TAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGT
TAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACA
NGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATC
AACTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGG
TGCCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAAT
TGTAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATC
TTTAANGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGA
AGTTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGG
TTTANNNNNNNNNN
Length of 5' end seq. 554
3' end seq. ID VHB751Z
3' end seq. 
>VHB751Z.Seq
NNNNNNNNNNCGATGTACAAAAGATCCTCCNAGAATATGAATCACCTTCAAGATATTATT
GCCATTTTAGGTATGGATGATTTATCTGAAGACCAAAAAGCAGNCTGTATTCCGTGCTCG
TAAGATTCAACGTTTCTTATCACAACCATTNGAAGTTGCCCACGCCTTCACCAATATGGA
AGGTAGATTCGTTAAACTCTCCGACTCTATCAAAGCCTTCAAAGGTATCCTCGAAGGTAA
ATACGATCATNTCCCAGAAGCTGCCTTCTATATGGTTGGTGGTATCGAANATGTCGAAAT
TAAAGCTGCTAAACTCTTAGAATCCGCTGGTAAAGAAGAAAAGAAAACCACCACTACCTC
CACCANTGGTCAAGTCAAAGAAGAAACTGTCAGAGAAAAAGTTACCAGACTCGTCGATGA
AGCTTACAATGCTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAACTGCTCACCTTGA
AGAATTACGTGCTCAATANAAAAGAACTTTGAATCTGAAATCAGTCAATTAGAAGTTTTA
TTAAAAAAATAAATTAACTTCCAAAACTAAAAATAATTATATA
Length of 3' end seq. 583
Connected seq. ID VHB751P
Connected seq. 
>VHB751P.Seq
TTCATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATC
TAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGT
TAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACA
NGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATC
AACTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGG
TGCCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAAT
TGTAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATC
TTTAANGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGA
AGTTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGG
TTTA----------CGATGTACAAAAGATCCTCCNAGAATATGAATCACCTTCAAGATAT
TATTGCCATTTTAGGTATGGATGATTTATCTGAAGACCAAAAAGCAGNCTGTATTCCGTG
CTCGTAAGATTCAACGTTTCTTATCACAACCATTNGAAGTTGCCCACGCCTTCACCAATA
TGGAAGGTAGATTCGTTAAACTCTCCGACTCTATCAAAGCCTTCAAAGGTATCCTCGAAG
GTAAATACGATCATNTCCCAGAAGCTGCCTTCTATATGGTTGGTGGTATCGAANATGTCG
AAATTAAAGCTGCTAAACTCTTAGAATCCGCTGGTAAAGAAGAAAAGAAAACCACCACTA
CCTCCACCANTGGTCAAGTCAAAGAAGAAACTGTCAGAGAAAAAGTTACCAGACTCGTCG
ATGAAGCTTACAATGCTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAACTGCTCACC
TTGAAGAATTACGTGCTCAATANAAAAGAACTTTGAATCTGAAATCAGTCAATTAGAAGT
TTTATTAAAAAAATAAATTAACTTCCAAAACTAAAAATAATTATATA
Length of connected seq. 1117
Full length Seq ID -
Full length Seq. -
Length of full length seq. -