VHB750
Library VH
(Link to library)
Clone ID VHB750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16427-1
Original site URL
Representative seq. ID VHB750P
(Link to Original site)
Representative DNA sequence
>VHB750 (VHB750Q) /CSM/VH/VHB7-C/VHB750Q.Seq.d/
GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT
AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT
AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT
CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT
AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA
CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA
GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA
GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCNAAATTATTAATTGGTATT
GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT
GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATXXXXXXXXXX
TCTCAATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAACATCTCTCAAT
TCCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTCATTGA
ATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTTACCAA
TCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGGTCCAT
TCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTATGTACA
CTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATTATGTG
ATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCATTCGTT
TAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACCACTTC
GTGTTATTNTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACGTAATG
AAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAATAGTG
ATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAACTCCATTAGCNG
CTCAATTTAATTCAATTTTATCGAAGATACAAGTCAAATCAAGATTCAAG
sequence update 2002.10.25
Translated Amino Acid sequence
v*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD
PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE
ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN
DLLQKYGSFMIGDLEN---

---SIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVY
LPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVS
LCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVIXMTKVNETAVKQQIE
RNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSKIQVKSRFK


Translated Amino Acid sequence (All Frames)
Frame A:
v*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMD
PTYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKE
ELVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILN
DLLQKYGSFMIGDLEN---

---sqswrikklsini*lqtslnsfhsymmvi*lldvvpsfh*itlltinqisfvmisls
iyqscttmlksnqnsfvklilvhsnirsmmvlksekqlsnvctlfwiplsirsm*lhssf
hyvmvskipntisncyvi**sfv*qtqmvllsskillsslnhfvlxs*lk*mkpllnnks
nvmknvfvqlyvlslpslefqivivslnlknllkiqfvqlh*xlnliqfyrryksnqds

Frame B:
cdcvvcvfwlihiiyiyntikchff*drf*krwvpsikildswqlmilqmn*kkillkwi
qlmkikllqny*h*qliqqimfkkmllnv*vy*lkelkihkqqkllihyqkif*knqikk
n*lkfqvlv*kqslqiyqvkvvqfql**lki*yxny*lvlivkn*kikmklkchv*if*m
iyyksmdhl*lei*ri---

---lnhge*rscrsifsskhlsipftlt*w*fnc*t*cppfielhcsq*tkshs**slcl
ftnlvqqc*nqtrths*s*swsiqt*gr*wy*nqknsfrmyvhsfgylyr*drcssihrf
im*wsqrypiryqivmsfndhsfsklkwccsprkyyspp*ttscyxhd*sk*nrc*ttnr
t**rmysfsftccrfhl*nsk***yr*i*ric*kynsynsisxsi*fnfiedtsqikiq

Frame C:
vivlcvyfg*ytlyiyiiq*nviffrtdfrkdgfhr*ry*ihgns*sck*irkryf*ngs
nl*k*ncykiisins*fsk*csrkcc*mfrfin*ks*rftsnrny*yiikkyfrrik*rr
is*nfrywfknnhykftk*r*fnfnfsn*kfstxiinwy***kikr*k*n*nvmfryfk*
fitkvwiiydwrfrey---

---SIMENKEVVDQYLAPNISQFLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVY
LPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVS
LCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVIXMTKVNETAVKQQIE
RNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSKIQVKSRFK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB750 (VHB750Q) /CSM/VH/VHB7-C/VHB750Q.Seq.d/ 1499 0.0
SHA612 (SHA612Q) /CSM/SH/SHA6-A/SHA612Q.Seq.d/ 1394 0.0
AHQ342 (AHQ342Q) /CSM/AH/AHQ3-B/AHQ342Q.Seq.d/ 1394 0.0
VHC193 (VHC193Q) /CSM/VH/VHC1-D/VHC193Q.Seq.d/ 1388 0.0
SHE744 (SHE744Q) /CSM/SH/SHE7-B/SHE744Q.Seq.d/ 1386 0.0
CHG869 (CHG869Q) /CSM/CH/CHG8-C/CHG869Q.Seq.d/ 1386 0.0
VHQ485 (VHQ485Q) /CSM/VH/VHQ4-D/VHQ485Q.Seq.d/ 1380 0.0
SHL726 (SHL726Q) /CSM/SH/SHL7-B/SHL726Q.Seq.d/ 1380 0.0
SHJ830 (SHJ830Q) /CSM/SH/SHJ8-B/SHJ830Q.Seq.d/ 1380 0.0
SHJ681 (SHJ681Q) /CSM/SH/SHJ6-D/SHJ681Q.Seq.d/ 1380 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1340 0.0 2
CC114176|CC114176.1 NDL.57K9.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.57K9, DNA sequence. 40 0.009 2
BI888273|BI888273.1 ZF637-2-000028 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_18D5;MPMGp637D0518 5', mRNA sequence. 52 0.041 1
CF446836|CF446836.1 EST683181 normalized cDNA library of onion Allium cepa cDNA clone ACAAS70, mRNA sequence. 50 0.16 1
EK325450|EK325450.1 1095467005348 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005746252 5', genomic survey sequence. 50 0.16 1
EK114733|EK114733.1 1092963195101 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061002137188 5', genomic survey sequence. 50 0.16 1
EK113847|EK113847.1 1092963158723 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061002137188 3', genomic survey sequence. 50 0.16 1
AC130470|AC130470.2 Homo sapiens chromosome 16 clone RP11-143P24, complete sequence. 38 0.18 3
DU016203|DU016203.1 238566 Tomato MboI BAC Library Solanum lycopersicum genomic clone SL_MboI0039H16 5, genomic survey sequence. 36 0.18 3
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.34 2
dna update 2007. 4.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86KD1) RecName: Full=Cullin-associated NEDD8-dissociated prote... 413 e-114
BT068509_1(BT068509|pid:none) Zea mays full-length cDNA clone ZM... 191 7e-47
AK069128_1(AK069128|pid:none) Oryza sativa Japonica Group cDNA c... 188 3e-46
BC004232_1(BC004232|pid:none) Homo sapiens cullin-associated and... 188 4e-46
AK001791_1(AK001791|pid:none) Homo sapiens cDNA FLJ10929 fis, cl... 188 4e-46
AB179357_1(AB179357|pid:none) Macaca fascicularis testis cDNA cl... 188 4e-46
BC026220_1(BC026220|pid:none) Homo sapiens cullin-associated and... 188 4e-46
AB020636_1(AB020636|pid:none) Homo sapiens mRNA for KIAA0829 pro... 188 4e-46
AK292456_1(AK292456|pid:none) Homo sapiens cDNA FLJ77762 complet... 188 4e-46
AL833880_1(AL833880|pid:none) Homo sapiens mRNA; cDNA DKFZp434P1... 188 4e-46
protein update 2009. 6.27
PSORT

psg: 0.90 gvh: 0.44 alm: 0.36 top: 0.40 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for VHB750 is cyt

5' end seq. ID VHB750F
5' end seq.
>VHB750F.Seq
GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT
AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT
AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT
CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT
AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA
CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA
GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA
GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCNAAATTATTAATTGGTATT
GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT
GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATNNNNNNNNNN
Length of 5' end seq. 600
3' end seq. ID VHB750Z
3' end seq.
>VHB750Z.Seq
NNNNNNNNNNTCTCAATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAAC
ATCTCTCAATTCCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTC
CTTTCATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTC
TATTTACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGAT
CTTGGTCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAA
TGTATGTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTT
TCATTATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATG
ATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTT
GAACCACTTCGTGTTATTNTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATC
GAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATT
CCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAACT
CCATTAGCNGCTCAATTTAATTCAATTTTATCGAAGATACAAGTCAAATCAAGATTCAAG
Length of 3' end seq. 720
Connected seq. ID VHB750P
Connected seq.
>VHB750P.Seq
GTGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAAT
AAAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATT
AGATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGAT
CCAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAAT
AATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCA
CAAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAA
GAATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAA
GGTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCNAAATTATTAATTGGTATT
GATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAAT
GATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATAT----------
TCTCAATCATGGAGAATAAAGAAGTTGTCGATCAATATTTAGCTCCAAACATCTCTCAAT
TCCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTCATTGA
ATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTTACCAA
TCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGGTCCAT
TCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTATGTACA
CTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATTATGTG
ATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCATTCGTT
TAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACCACTTC
GTGTTATTNTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACGTAATG
AAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAATAGTG
ATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAACTCCATTAGCNG
CTCAATTTAATTCAATTTTATCGAAGATACAAGTCAAATCAAGATTCAAG
Length of connected seq. 1300
Full length Seq ID -
Full length Seq. -
Length of full length seq. -