VHB741
Library VH
(Link to library)
Clone ID VHB741
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13473-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB741 (VHB741Q) /CSM/VH/VHB7-B/VHB741Q.Seq.d/
AAAAAGACCATCATAATATAATCCAATATTTCTTTTTTTTTGAAATACAGAAAGTTTGTC
ACACAAAAATGACATTAAACCAAATAATTTTATCATTGATTTTGGGTTTGAGTTTAATGA
CTACAATCATTAAATCAGTTCCAATGGACCCAACAATTTATATTGAAGGTACAATTTTTG
ATCAATGGCCAGAATATAATTATAATTTTGAAAAAACCAACCCAGGAAGTAATGTTAAAA
CCCTTGGAATGGTAAAAGCAAAATTGAACTCAACAACAAAAGTTCCAGAACTTTCTTCAG
ATGATACTAAAACTTCACCAAATACATTAGGTACTATGCAATATCCAGAGTTATTTAAAT
ATCACTTTACATCAAATGTTGATGCACCAGCATCCAAAAACTCTGGTAAAAATTTACCAA
TGAAAATACAATTCAAATTAGATCAAGACAATAGTGGTTTTTATACTTTTTTCAATCAAA
CTTTTTTCCCAATTGATAACATGGGCTACGATGTAGATCCATCATTTAGAATTTATAAAC
AAAGTGGTAACTATCATAATTTCCATTTTTGTGTAAAGATGAATAGTCGTTTTACTTATA
XXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
KDHHNIIQYFFFFEIQKVCHTKMTLNQIILSLILGLSLMTTIIKSVPMDPTIYIEGTIFD
QWPEYNYNFEKTNPGSNVKTLGMVKAKLNSTTKVPELSSDDTKTSPNTLGTMQYPELFKY
HFTSNVDAPASKNSGKNLPMKIQFKLDQDNSGFYTFFNQTFFPIDNMGYDVDPSFRIYKQ
SGNYHNFHFCVKMNSRFTY---


Translated Amino Acid sequence (All Frames)
Frame A:
kktiii*snisfflkyrkfvtqk*h*tk*fyh*fwv*v**lqslnqfqwtqqfilkvqfl
ingqniiiilkkptqevmlkplew*kqn*tqqqkfqnflqmilklhqih*vlcniqsyln
itlhqmlmhqhpktlvkiyq*kynsn*iktivvfilfsiklfsqlitwatm*ihhlefin
kvvtiiisifv*r*ivvll---


Frame B:
krps*ynpiflff*nteslshkndikpnnfiidfgfefndynh*issngpnnly*rynf*
smari*l*f*knqprk*c*npwngkskielnnkssrtffr*y*nftkyiryyaisrvi*i
slyikc*ctsiqklw*kftnentiqirsrq*wflyffqsnffpn**hglrcrsii*nl*t
kw*ls*fpflckde*sfyl---


Frame C:
KDHHNIIQYFFFFEIQKVCHTKMTLNQIILSLILGLSLMTTIIKSVPMDPTIYIEGTIFD
QWPEYNYNFEKTNPGSNVKTLGMVKAKLNSTTKVPELSSDDTKTSPNTLGTMQYPELFKY
HFTSNVDAPASKNSGKNLPMKIQFKLDQDNSGFYTFFNQTFFPIDNMGYDVDPSFRIYKQ
SGNYHNFHFCVKMNSRFTY---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHH188 (VHH188Q) /CSM/VH/VHH1-D/VHH188Q.Seq.d/ 850 0.0
VHB741 (VHB741Q) /CSM/VH/VHB7-B/VHB741Q.Seq.d/ 850 0.0
VHM860 (VHM860Q) /CSM/VH/VHM8-C/VHM860Q.Seq.d/ 848 0.0
VHJ868 (VHJ868Q) /CSM/VH/VHJ8-C/VHJ868Q.Seq.d/ 848 0.0
VHG114 (VHG114Q) /CSM/VH/VHG1-A/VHG114Q.Seq.d/ 848 0.0
VHE834 (VHE834Q) /CSM/VH/VHE8-B/VHE834Q.Seq.d/ 848 0.0
VHN519 (VHN519Q) /CSM/VH/VHN5-A/VHN519Q.Seq.d/ 844 0.0
VHQ428 (VHQ428Q) /CSM/VH/VHQ4-B/VHQ428Q.Seq.d/ 842 0.0
VHF284 (VHF284Q) /CSM/VH/VHF2-D/VHF284Q.Seq.d/ 842 0.0
VHB861 (VHB861Q) /CSM/VH/VHB8-C/VHB861Q.Seq.d/ 842 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 529 0.0 5
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds. 44 0.033 2
AC137804|AC137804.1 Homo sapiens chromosome 16 clone RP11-78G5, WORKING DRAFT SEQUENCE, 1 unordered piece. 50 0.073 1
AC137784|AC137784.1 Homo sapiens chromosome 16 clone RP11-1407F4, WORKING DRAFT SEQUENCE, 49 unordered pieces. 50 0.073 1
AC106014|AC106014.1 Homo sapiens chromosome 8 clone CTD-2064I9 map 8, LOW-PASS SEQUENCE SAMPLING. 50 0.073 1
AC021420|AC021420.3 Homo sapiens chromosome 4 clone RP11-92K5 map 4, WORKING DRAFT SEQUENCE, 17 unordered pieces. 50 0.073 1
AC093783|AC093783.2 Homo sapiens BAC clone RP11-209D20 from 4, complete sequence. 50 0.073 1
EK380370|EK380370.1 1095469459668 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005866264 3', genomic survey sequence. 42 0.20 2
AM423266|AM423266.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X092578.2, clone ENTAV 115. 48 0.29 1
CZ904014|CZ904014.1 ulea001f003m12f0 Tomato methylation unfiltered library (LibID: 117) Solanum lycopersicum genomic, genomic survey sequence. 40 0.63 2
dna update 2007. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 336 3e-91
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 123 5e-27
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 121 2e-26
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 109 5e-23
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 106 4e-22
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 96 8e-19
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 89 1e-16
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 79 8e-14
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 74 3e-12
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 62 1e-08
protein update 2009. 2.24
PSORT

psg: 0.92 gvh: 0.52 alm: 0.27 top: 0.37 tms: 0.07 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.19 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHB741 is cyt

5' end seq. ID VHB741F
5' end seq.
>VHB741F.Seq
AAAAAGACCATCATAATATAATCCAATATTTCTTTTTTTTTGAAATACAGAAAGTTTGTC
ACACAAAAATGACATTAAACCAAATAATTTTATCATTGATTTTGGGTTTGAGTTTAATGA
CTACAATCATTAAATCAGTTCCAATGGACCCAACAATTTATATTGAAGGTACAATTTTTG
ATCAATGGCCAGAATATAATTATAATTTTGAAAAAACCAACCCAGGAAGTAATGTTAAAA
CCCTTGGAATGGTAAAAGCAAAATTGAACTCAACAACAAAAGTTCCAGAACTTTCTTCAG
ATGATACTAAAACTTCACCAAATACATTAGGTACTATGCAATATCCAGAGTTATTTAAAT
ATCACTTTACATCAAATGTTGATGCACCAGCATCCAAAAACTCTGGTAAAAATTTACCAA
TGAAAATACAATTCAAATTAGATCAAGACAATAGTGGTTTTTATACTTTTTTCAATCAAA
CTTTTTTCCCAATTGATAACATGGGCTACGATGTAGATCCATCATTTAGAATTTATAAAC
AAAGTGGTAACTATCATAATTTCCATTTTTGTGTAAAGATGAATAGTCGTTTTACTTATA
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -