VHB740
Library VH
(Link to library)
Clone ID VHB740
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16250-1
Original site URL
Representative seq. ID VHB740P
(Link to Original site)
Representative DNA sequence
>VHB740 (VHB740Q) /CSM/VH/VHB7-B/VHB740Q.Seq.d/
AAAACATAAAAAAAACAAATAATGAATAAAATTAATTTATTTATAATTTTAACAATTTTA
ATTAATTGTTATTTTGGTATTAATCAAGTTAATGGTAAATTTCATCAAGAATTAGGATGG
AAACAATCATTAACAAGAGAATTTATTGATCCAAATACACCAATCACTTTTAGAATTTAT
GTAAAACAACAAAATTTTGAACAATTAAAAATCAAAGTTCGTGATGTTTCAGACCCACAC
TCAAACAACTATGGTAATTATTTAAGTGTTGATGAAATTACATCAATAATTTCACCATCA
AAAGAATCATTAACCTTAATTGAAAAATGGATTCAACCATTCAATCCAATTGAAATTGAA
TACAATGATAATCAAGATTGTATGTTCATTACAATGTCAAAACAAAATATTGAAAAATTA
ATGAATATTAAAATCTTTAAATTTATTCATCAAAATGGTAAAATCATTCTTCGTTCACCA
ATTGATCCAATTATTCCTTCAAATTTATTAAAACATATTGATTTAATTACTGGTATTAGT
CATTTCCCAGTTTATAAGTTAAAAAATAAAATAAATTCTTTATCTTCATCATCATCTTCA
TCATCAGAAXXXXXXXXXXTTTAGGTGGTCCACCAATGGGTGCTAATGGTTGTGAAAATG
CAAGAGGTGATTGGCCATCAAATTCAGAATATGTTAGTGCAGTTGGTTCAATTTATTTTA
CACCATATTCAGCACCAATTTGTTATGATTCAGTTTCAAGTGGTGGTGTAAATTGTCAAT
CACTTCCAATTGGTGAAGTTGGTGTTTCAATTGATTATGGTACAATGTGGACATCAGGTG
GTGGTTTCTCAAATTTCACAGAGACTGCTTACTATCAAAAAGATTTCGTAAATGAATATT
TAAATAAATTAAAAGAATTGGATGTTTCACCACCATCAAATCTTTTCAATTCAAATGGTA
GAGCATATCCAGATTTTTCAACAGTTGGTAAGAATTTATATGTTATCAATGGTGGTGAAT
GGTTATCAGTTGATGGTACATCTGCTTCTGCACCAATCTTTGCTGGTATGATTACAATTC
TCAATGATATTAGATCAAATAAAGGTTTACCACAATTAGGTTTCCTTAATCCATTATTCT
ATCAAATCGCAAGAACAAATCCAGAAGCTTTCTATGATGTCGTCGTTGGTAATAATCGTT
GTGGTCTCTCTGATTCTACTCCAGTTTGTTGTGATTTCGGTTATACTGCTACAACTGGTT
TCGATACTGTTTCAGGTTTAGGTAGACCAGATATGTCTGTTTTAAGNAAATTATNATCAA
TATTAAAAAATAAAATAAAATAAAAAATCAAAAAAAAGTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
kt*KKQIMNKINLFIILTILINCYFGINQVNGKFHQELGWKQSLTREFIDPNTPITFRIY
VKQQNFEQLKIKVRDVSDPHSNNYGNYLSVDEITSIISPSKESLTLIEKWIQPFNPIEIE
YNDNQDCMFITMSKQNIEKLMNIKIFKFIHQNGKIILRSPIDPIIPSNLLKHIDLITGIS
HFPVYKLKNKINSLSSSSSSSSE---

---LGGPPMGANGCENARGDWPSNSEYVSAVGSIYFTPYSAPICYDSVSSGGVNCQSLPI
GEVGVSIDYGTMWTSGGGFSNFTETAYYQKDFVNEYLNKLKELDVSPPSNLFNSNGRAYP
DFSTVGKNLYVINGGEWLSVDGTSASAPIFAGMITILNDIRSNKGLPQLGFLNPLFYQIA
RTNPEAFYDVVVGNNRCGLSDSTPVCCDFGYTATTGFDTVSGLGRPDMSVLXKLXSILKN
KIK*kikkkf


Translated Amino Acid sequence (All Frames)
Frame A:
kt*KKQIMNKINLFIILTILINCYFGINQVNGKFHQELGWKQSLTREFIDPNTPITFRIY
VKQQNFEQLKIKVRDVSDPHSNNYGNYLSVDEITSIISPSKESLTLIEKWIQPFNPIEIE
YNDNQDCMFITMSKQNIEKLMNIKIFKFIHQNGKIILRSPIDPIIPSNLLKHIDLITGIS
HFPVYKLKNKINSLSSSSSSSSE---

---frwstngc*wl*kckr*laikfric*cswfnlfytifstnll*fsfkwwcklsitsn
w*swcfn*lwynvdirwwflkfhrdcllskrfrk*ifk*ikrigcfttiksfqfkw*sis
rffnsw*eficyqww*mvis*wyicfctnlcwydynsq*y*ik*rfttirfp*siilsnr
knksrsfl*crrw**slwsl*fyssll*frlycynwfrycfrfr*tryvcfkxixinikk
*nkiknqkkv

Frame B:
khkknk**ikliyl*f*qf*livilvliklmvnfikn*dgnnh*qenlliqihqsllefm
*nnkilnn*kskfvmfqthtqttmvii*vlmklhq*fhhqknh*p*lkngfnhsiqlkln
tmiikivcslqcqnkilkn**ilkslnlfikmvksffvhqliqlflqiy*nili*llvlv
isqfis*kik*ilylhhhlhhq---

---LGGPPMGANGCENARGDWPSNSEYVSAVGSIYFTPYSAPICYDSVSSGGVNCQSLPI
GEVGVSIDYGTMWTSGGGFSNFTETAYYQKDFVNEYLNKLKELDVSPPSNLFNSNGRAYP
DFSTVGKNLYVINGGEWLSVDGTSASAPIFAGMITILNDIRSNKGLPQLGFLNPLFYQIA
RTNPEAFYDVVVGNNRCGLSDSTPVCCDFGYTATTGFDTVSGLGRPDMSVLXKLXSILKN
KIK*kikkkf

Frame C:
nikktnne*n*fiynfnnfn*llfwy*ss*w*issrirmetiinkriy*skytnhf*nlc
kttkf*tiknqss*cfrptlkqlw*lfkc**nyinnftikriinln*kmdstiqsn*n*i
q**srlyvhynvktky*kiney*nl*iysskw*nhssftn*snysfkfikty*fnywy*s
fpsl*vkk*nkffifiiifiir---

---*vvhqwvlmvvkmqevighqiqnmlvqlvqfilhhiqhqfvmiqfqvvv*ivnhfql
vklvfqlimvqcghqvvvsqisqrlltikkis*mni*in*knwmfhhhqifsiqmvehiq
ifqqlvriymlsmvvngyqlmvhlllhqsllv*lqfsmildqikvyhn*vslihysiksq
eqiqklsmmsslviivvvslillqfvvisvillqlvsilfqv*vdqiclf*xnyxqy*ki
k*nkkskksl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB740 (VHB740Q) /CSM/VH/VHB7-B/VHB740Q.Seq.d/ 1649 0.0
VHP219 (VHP219Q) /CSM/VH/VHP2-A/VHP219Q.Seq.d/ 1378 0.0
VHI615 (VHI615Q) /CSM/VH/VHI6-A/VHI615Q.Seq.d/ 1378 0.0
VHA254 (VHA254Q) /CSM/VH/VHA2-C/VHA254Q.Seq.d/ 1378 0.0
VSD253 (VSD253Q) /CSM/VS/VSD2-C/VSD253Q.Seq.d/ 1372 0.0
VHC267 (VHC267Q) /CSM/VH/VHC2-C/VHC267Q.Seq.d/ 1358 0.0
VHL629 (VHL629Q) /CSM/VH/VHL6-B/VHL629Q.Seq.d/ 1356 0.0
VHI351 (VHI351Q) /CSM/VH/VHI3-C/VHI351Q.Seq.d/ 1356 0.0
VHP835 (VHP835Q) /CSM/VH/VHP8-B/VHP835Q.Seq.d/ 1352 0.0
VHP676 (VHP676Q) /CSM/VH/VHP6-D/VHP676Q.Seq.d/ 1352 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY055590|AY055590.1 Dictyostelium discoideum dipeptidyl aminopeptidase mRNA, complete cds. 1336 0.0 1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 1273 0.0 1
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 48 7e-06 6
AU087032|AU087032.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn3733. 48 7e-05 3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 1e-04 14
CT029995|CT029995.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-109M21. 52 8e-04 2
AM192779|AM192779.1 Paracentrotus lividus EST, clone MPMGp1172G0130Q, 5' end. 56 0.003 1
AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence. 44 0.004 7
AC178425|AC178425.1 Strongylocentrotus purpuratus clone R3-3113L12, WORKING DRAFT SEQUENCE, 14 unordered pieces. 48 0.007 3
EL915663|EL915663.1 INIT2_93_F11.g2_A006 G5 trophont cDNA (INIT2) Ichthyophthirius multifiliis cDNA clone INIT2_93_F11_A006 3', mRNA sequence. 54 0.011 1
dna update 2007. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso... 474 e-132
AF142415_1(AF142415|pid:none) Amoeba proteus pepstatin-insensiti... 149 3e-34
AM411678_1(AM411678|pid:none) Plasmodiophora brassicae ORF1 for ... 146 1e-33
(Q8MZS4) RecName: Full=Physarolisin; EC=3.4.21.103; Alt... 120 1e-25
(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 117 1e-24
BC068900_1(BC068900|pid:none) Xenopus laevis hypothetical protei... 114 8e-24
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family... 114 1e-23
AJ585109_1(AJ585109|pid:none) Aspergillus fumigatus mRNA for fuS... 112 3e-23
BC135587_1(BC135587|pid:none) Xenopus tropicalis hypothetical pr... 110 9e-23
AC115599_50(AC115599|pid:none) Dictyostelium discoideum chromoso... 109 2e-22
protein update 2009. 6.27
PSORT

psg: 0.99 gvh: 0.52 alm: 0.26 top: 0.37 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: mitochondrial
20.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
12.0 %: Golgi
8.0 %: plasma membrane
8.0 %: nuclear
4.0 %: extracellular, including cell wall

>> prediction for VHB740 is mit

5' end seq. ID VHB740F
5' end seq.
>VHB740F.Seq
AAAACATAAAAAAAACAAATAATGAATAAAATTAATTTATTTATAATTTTAACAATTTTA
ATTAATTGTTATTTTGGTATTAATCAAGTTAATGGTAAATTTCATCAAGAATTAGGATGG
AAACAATCATTAACAAGAGAATTTATTGATCCAAATACACCAATCACTTTTAGAATTTAT
GTAAAACAACAAAATTTTGAACAATTAAAAATCAAAGTTCGTGATGTTTCAGACCCACAC
TCAAACAACTATGGTAATTATTTAAGTGTTGATGAAATTACATCAATAATTTCACCATCA
AAAGAATCATTAACCTTAATTGAAAAATGGATTCAACCATTCAATCCAATTGAAATTGAA
TACAATGATAATCAAGATTGTATGTTCATTACAATGTCAAAACAAAATATTGAAAAATTA
ATGAATATTAAAATCTTTAAATTTATTCATCAAAATGGTAAAATCATTCTTCGTTCACCA
ATTGATCCAATTATTCCTTCAAATTTATTAAAACATATTGATTTAATTACTGGTATTAGT
CATTTCCCAGTTTATAAGTTAAAAAATAAAATAAATTCTTTATCTTCATCATCATCTTCA
TCATCAGAANNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHB740Z
3' end seq.
>VHB740Z.Seq
NNNNNNNNNNTTTAGGTGGTCCACCAATGGGTGCTAATGGTTGTGAAAATGCAAGAGGTG
ATTGGCCATCAAATTCAGAATATGTTAGTGCAGTTGGTTCAATTTATTTTACACCATATT
CAGCACCAATTTGTTATGATTCAGTTTCAAGTGGTGGTGTAAATTGTCAATCACTTCCAA
TTGGTGAAGTTGGTGTTTCAATTGATTATGGTACAATGTGGACATCAGGTGGTGGTTTCT
CAAATTTCACAGAGACTGCTTACTATCAAAAAGATTTCGTAAATGAATATTTAAATAAAT
TAAAAGAATTGGATGTTTCACCACCATCAAATCTTTTCAATTCAAATGGTAGAGCATATC
CAGATTTTTCAACAGTTGGTAAGAATTTATATGTTATCAATGGTGGTGAATGGTTATCAG
TTGATGGTACATCTGCTTCTGCACCAATCTTTGCTGGTATGATTACAATTCTCAATGATA
TTAGATCAAATAAAGGTTTACCACAATTAGGTTTCCTTAATCCATTATTCTATCAAATCG
CAAGAACAAATCCAGAAGCTTTCTATGATGTCGTCGTTGGTAATAATCGTTGTGGTCTCT
CTGATTCTACTCCAGTTTGTTGTGATTTCGGTTATACTGCTACAACTGGTTTCGATACTG
TTTCAGGTTTAGGTAGACCAGATATGTCTGTTTTAAGNAAATTATNATCAATATTAAAAA
ATAAAATAAAATAAAAAATCAAAAAAAAGTTTA
Length of 3' end seq. 753
Connected seq. ID VHB740P
Connected seq.
>VHB740P.Seq
AAAACATAAAAAAAACAAATAATGAATAAAATTAATTTATTTATAATTTTAACAATTTTA
ATTAATTGTTATTTTGGTATTAATCAAGTTAATGGTAAATTTCATCAAGAATTAGGATGG
AAACAATCATTAACAAGAGAATTTATTGATCCAAATACACCAATCACTTTTAGAATTTAT
GTAAAACAACAAAATTTTGAACAATTAAAAATCAAAGTTCGTGATGTTTCAGACCCACAC
TCAAACAACTATGGTAATTATTTAAGTGTTGATGAAATTACATCAATAATTTCACCATCA
AAAGAATCATTAACCTTAATTGAAAAATGGATTCAACCATTCAATCCAATTGAAATTGAA
TACAATGATAATCAAGATTGTATGTTCATTACAATGTCAAAACAAAATATTGAAAAATTA
ATGAATATTAAAATCTTTAAATTTATTCATCAAAATGGTAAAATCATTCTTCGTTCACCA
ATTGATCCAATTATTCCTTCAAATTTATTAAAACATATTGATTTAATTACTGGTATTAGT
CATTTCCCAGTTTATAAGTTAAAAAATAAAATAAATTCTTTATCTTCATCATCATCTTCA
TCATCAGAA----------TTTAGGTGGTCCACCAATGGGTGCTAATGGTTGTGAAAATG
CAAGAGGTGATTGGCCATCAAATTCAGAATATGTTAGTGCAGTTGGTTCAATTTATTTTA
CACCATATTCAGCACCAATTTGTTATGATTCAGTTTCAAGTGGTGGTGTAAATTGTCAAT
CACTTCCAATTGGTGAAGTTGGTGTTTCAATTGATTATGGTACAATGTGGACATCAGGTG
GTGGTTTCTCAAATTTCACAGAGACTGCTTACTATCAAAAAGATTTCGTAAATGAATATT
TAAATAAATTAAAAGAATTGGATGTTTCACCACCATCAAATCTTTTCAATTCAAATGGTA
GAGCATATCCAGATTTTTCAACAGTTGGTAAGAATTTATATGTTATCAATGGTGGTGAAT
GGTTATCAGTTGATGGTACATCTGCTTCTGCACCAATCTTTGCTGGTATGATTACAATTC
TCAATGATATTAGATCAAATAAAGGTTTACCACAATTAGGTTTCCTTAATCCATTATTCT
ATCAAATCGCAAGAACAAATCCAGAAGCTTTCTATGATGTCGTCGTTGGTAATAATCGTT
GTGGTCTCTCTGATTCTACTCCAGTTTGTTGTGATTTCGGTTATACTGCTACAACTGGTT
TCGATACTGTTTCAGGTTTAGGTAGACCAGATATGTCTGTTTTAAGNAAATTATNATCAA
TATTAAAAAATAAAATAAAATAAAAAATCAAAAAAAAGTTTA
Length of connected seq. 1352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -