VHB725
Library VH
(Link to library)
Clone ID VHB725
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB725 (VHB725Q) /CSM/VH/VHB7-B/VHB725Q.Seq.d/
XXXXXXXXXXGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGT
GCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGG
TATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAAC
ATTGACGACCTTAACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATC
GCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGG
GCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTC
TTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCA
AAGGATTCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCAT
GAATTCCCAAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGG
TTGATCTCTGCAATGTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---AGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWYSHFIWLMFKQDPKKIGRANI
DDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFL
VNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWL
ISAM


Translated Amino Acid sequence (All Frames)
Frame A:
---crccrrfmslvvkrsscssslsry**rsifsfigflvfpfhlvnvqtrskenr*skh
*rp*rrsmgyvat*tlh*nrhfygsrfpnigswfrlg*lgwwlfllwctssrysstfhil
gqfigslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l*krl*ilsi*sn*mv
dlcnv


Frame B:
---AGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWYSHFIWLMFKQDPKKIGRANI
DDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFL
VNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWL
ISAM


Frame C:
---qvlskvhvvggqeiivliivisilikihiqlhwvsgipisfg*csnkiqrksveqtl
ttltpihglcgninitlkspllwvsfsqhw*lv*vgviglvvistlvyfvslqfniphsw
sihwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmtietlinsinmiqlng*
slqc


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB725 (VHB725Q) /CSM/VH/VHB7-B/VHB725Q.Seq.d/ 1084 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1076 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 1068 0.0
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/ 1061 0.0
VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/ 1053 0.0
VHL555 (VHL555Q) /CSM/VH/VHL5-C/VHL555Q.Seq.d/ 1051 0.0
VHJ240 (VHJ240Q) /CSM/VH/VHJ2-B/VHJ240Q.Seq.d/ 1047 0.0
VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/ 1047 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 1045 0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/ 993 0.0

own update 2002.12.23
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1074 0.0 1
DY886427|DY886427.1 CeleSEQ2079 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ2079, mRNA sequence. 68 2e-25 4
DY892961|DY892961.1 CeleSEQ12104 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ12104, mRNA sequence. 68 2e-25 4
DY888809|DY888809.1 CeleSEQ6138 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6138, mRNA sequence. 68 3e-24 4
DY895351|DY895351.1 CeleSEQ15152 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15152, mRNA sequence. 52 8e-19 4
DY885896|DY885896.1 CeleSEQ991 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ991, mRNA sequence. 52 2e-18 4
DY885119|DY885119.1 CeleSEQ310 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ310, mRNA sequence. 68 4e-17 3
DY885952|DY885952.1 CeleSEQ1408 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ1408, mRNA sequence. 68 6e-17 3
DY885558|DY885558.1 CeleSEQ846 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ846, mRNA sequence. 68 8e-17 3
DY890339|DY890339.1 CeleSEQ9316 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9316, mRNA sequence. 68 2e-16 3
dna update 2007. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 400 e-110
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 287 1e-76
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura... 287 1e-76
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 286 3e-76
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 284 1e-75
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 282 4e-75
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 280 1e-74
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 279 3e-74
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9... 279 3e-74
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 278 5e-74
protein update 2009. 6.27
PSORT

psg: 0.43 gvh: 0.38 alm: 0.32 top: 0.40 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
20.0 %: endoplasmic reticulum
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHB725 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB725Z
3' end seq.
>VHB725Z.Seq
NNNNNNNNNNGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGT
GCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGG
TATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAAC
ATTGACGACCTTAACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATC
GCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGG
GCTGGTGGTTATTTCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTC
TTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCA
AAGGATTCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCAT
GAATTCCCAAATGACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGG
TTGATCTCTGCAATGTA
Length of 3' end seq. 557
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -