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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB717
Library VH
(Link to library)
Clone ID VHB717
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12406-1
Original site URL
Representative seq. ID VHB717P
(Link to Original site)
Representative DNA sequence 
>VHB717 (VHB717Q) /CSM/VH/VHB7-A/VHB717Q.Seq.d/
AATTACACACCAACTTCAATTCATTCCATCAGCTGATCATATAGTTGTTGTTGATAATGG
TAAATTAGTTCAAGGTACTTATTCAGAATTAAAATCAAAAGGTATTGATTTCGAATCAAT
TATGAAAACAAAGAAATTAAATATTGATAATCAACAACAACAGCAACAGCACGAAAAAGA
AAATGATATAGTTTTAAGTGATGAAGATAGTAATAATAGTATTAAGAATAATAATAATAT
TTCAAATTTAATAGATATTGATGAAGTTATAAGTGATGAAAATGATTCAAATTTAATTGA
GAGATCAAAATTATTAGTAGATGAGGATAGAAATGAAGGATCAGTTAATTTAAGAGTTTA
TAAAGAATATTTTAAACATGGTTCATCTATACCATTGTTTATTATGACGTGCATAGTTTA
TATGATTAGCCAAATCATTTATCAAATGTCAGATTTTTGGTTATCAACATGGTCACAACG
TTCAATACCTGATAAAACAGATAAATATTATATATCAATTTATTTATTGTTTATAGTGGG
TTTTATAATTTTCTTGGTAATTAGATATTTTATGATGGCACATGTTACATTTTCAGCATC
AAAGAATTTACATCAATCGTTATTAAAATCGGTTGGTTTTGCAAGXXXXXXXXXXTTGAT
TTTGATAATGATGATTATGATGGTTTTAAATTATCAAAGAAATGGCTTACTAAAGGTGAA
ATTGAATTTAGAAATGTTGAAATTAAATATGGTCATTCAGGAGAATCAAGTTTAAAAAAT
TTCACATTAAAAATAAATCAAAGAGATCATATTGGTATTGTTGGTAGAACTGGTGCAGGT
AAGAGTACAATTGGTAATGGTTTGTTTCGTATGGTTGAATGTTCTAAAGGTTCAATTTTA
ATTGATGGCGTTGACATTTCAAAGATTGGATTACACGAGTTAAGAAGTTCACTTGGTATT
GTCCCACAAGATCCATTCATTTTCTCTGGTACTATTCGTTTAAATATCGATCCATTTAAT
AAATACACTGATAGTGAAATTTGGGTAGCTTTAGAAAAGGTTAAATTAAAATCAACAATT
TCATCAATGCCATTAAAATTAGAAACTATGATAGAAGAAGGTGGTGACGGTTTATCGTTT
GGTCAAAAGCAATTACTTTGTTTATCAAGAACAATTTTAAAGAATTCTAAAGTAGTCCTA
ATGGATGAAGCTACCTCTGGTATAGATTATGTAACAAGTGATTTAATTAAACAAACTATT
AATAATTGTTTTAAAAATTGTACAATGCTAACAATTGCACATAGACTCGATACAATCATT
GATAGTACTAAAATCGCTGTTATTGATAAAGGTAAATTAATAGAATATGATACACCAAAT
AATCTCATTGAAAATCAAGAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ITHQLQFIPSADHIVVVDNGKLVQGTYSELKSKGIDFESIMKTKKLNIDNQQQQQQHEKE
NDIVLSDEDSNNSIKNNNNISNLIDIDEVISDENDSNLIERSKLLVDEDRNEGSVNLRVY
KEYFKHGSSIPLFIMTCIVYMISQIIYQMSDFWLSTWSQRSIPDKTDKYYISIYLLFIVG
FIIFLVIRYFMMAHVTFSASKNLHQSLLKSVGFA---

---DFDNDDYDGFKLSKKWLTKGEIEFRNVEIKYGHSGESSLKNFTLKINQRDHIGIVGR
TGAGKSTIGNGLFRMVECSKGSILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNI
DPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNS
KVVLMDEATSGIDYVTSDLIKQTINNCFKNCTMLTIAHRLDTIIDSTKIAVIDKGKLIEY
DTPNNLIENQE
Translated Amino Acid sequence (All Frames) 
Frame A:
nytptsihsis*syscc**w*issrylfrikikry*frinyenkeiky**stttatarkr
k*ysfk**r****y*e***yfkfnry**syk**k*fkfn*eikiisr*g*k*ris*fksl
*rif*twfiytivyydvhslyd*pnhlsnvrflvinmvttfnt**nr*ilyinlfivysg
fynflgn*ifydgtcyifsikeftsivikigwfck---

---lilimmimmvlnyqrngllkvklnlemlklnmviqenqv*kish*k*ikeiilvllv
elvqvrvqlvmvcfvwlnvlkvqf*lmaltfqrldyts*evhlvlshkihsfslvlfv*i
sihlintlivkfg*l*krln*nqqfhqch*n*kl**kkvvtvyrlvksnyfvyqeqf*ri
lk*s*wmklplv*im*qvi*lnklliivlkivqc*qlhidsiqslivlkslllikvn**n
mihqiislkikn

Frame B:
ITHQLQFIPSADHIVVVDNGKLVQGTYSELKSKGIDFESIMKTKKLNIDNQQQQQQHEKE
NDIVLSDEDSNNSIKNNNNISNLIDIDEVISDENDSNLIERSKLLVDEDRNEGSVNLRVY
KEYFKHGSSIPLFIMTCIVYMISQIIYQMSDFWLSTWSQRSIPDKTDKYYISIYLLFIVG
FIIFLVIRYFMMAHVTFSASKNLHQSLLKSVGFA---

---*f****l*wf*iikemay*r*n*i*kc*n*iwsfrrikfkkfhiknkskrsywycw*
nwcr*eynw*wfvsyg*mf*rfnfn*wr*hfkdwitrvkkftwycptrsihflwyysfky
rsi**ih***nlgsfrkg*ikinnfinaikirnydrrrw*rfivwskaitlfiknnfkef
*sspng*sylwyrlcnk*fn*tny**lf*klynannct*trynh**y*nrcy**r*inri
*ytk*sh*ksr

Frame C:
lhtnfnsfhqlii*lllimvn*fkvliqn*nqkvlisnql*kqrn*iliinnnsnstkkk
mi*f*vmkiviivlriiiifqi**ilmkl*vmkmiqi*lrdqny**mriemkdqli*efi
knilnmvhlyhcll*ra*fi*laksfikcqifgyqhghnvqylikqiniiyqfiycl*wv
l*fsw*ldil*whmlhfqhqriyinry*nrlvlq---

---DFDNDDYDGFKLSKKWLTKGEIEFRNVEIKYGHSGESSLKNFTLKINQRDHIGIVGR
TGAGKSTIGNGLFRMVECSKGSILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNI
DPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNS
KVVLMDEATSGIDYVTSDLIKQTINNCFKNCTMLTIAHRLDTIIDSTKIAVIDKGKLIEY
DTPNNLIENQE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB717 (VHB717Q) /CSM/VH/VHB7-A/VHB717Q.Seq.d/                       2720   0.0
VHB817 (VHB817Q) /CSM/VH/VHB8-A/VHB817Q.Seq.d/                       1411   0.0
VHF815 (VHF815Q) /CSM/VH/VHF8-A/VHF815Q.Seq.d/                       1088   0.0
FC-IC1236 (FC-IC1236Q) /CSM/FC-IC/FC-IC1236Q.Seq.d/                    96   2e-18
FC-IC1233 (FC-IC1233Q) /CSM/FC-IC/FC-IC1233Q.Seq.d/                    96   2e-18
VSB713 (VSB713Q) /CSM/VS/VSB7-A/VSB713Q.Seq.d/                         90   1e-16
SSD436 (SSD436Q) /CSM/SS/SSD4-B/SSD436Q.Seq.d/                         52   2e-05
AFN445 (AFN445Q) /CSM/AF/AFN4-B/AFN445Q.Seq.d/                         52   2e-05
VHK186 (VHK186Q) /CSM/VH/VHK1-D/VHK186Q.Seq.d/                         50   9e-05
VHH129 (VHH129Q) /CSM/VH/VHH1-B/VHH129Q.Seq.d/                         50   9e-05
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF474333|AF474333.1 Dictyostelium discoideum ABC transporter ABCC.1 (abcC1) gene, complete cds.  1473   0.0    1
AF474345|AF474345.1 Dictyostelium discoideum ABC transporter ABCC.13 (abcC13) gene, partial cds.   825   0.0    8
AF474334|AF474334.1 Dictyostelium discoideum ABC transporter ABCC.2 (abcC2) gene, complete cds.   149   e-155  11
AF474338|AF474338.1 Dictyostelium discoideum ABC transporter ABCC.6 (abcC6) gene, complete cds.    70   6e-58  11
AF474341|AF474341.1 Dictyostelium discoideum ABC transporter ABCC.9 (abcC9) gene, complete cds.    92   2e-53  11
AY082376|AY082376.1 Dictyostelium discoideum ABC transporter ABCC.14 gene, complete cds; and unknown gene.    70   1e-46  11
AF474339|AF474339.1 Dictyostelium discoideum ABC transporter ABCC.7 (abcC7) gene, complete cds.    68   7e-43  9
AF474343|AF474343.1 Dictyostelium discoideum ABC transporter ABCC.11 (abcC11) gene, partial cds.    42   3e-15  6
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   4e-07  16
AF474336|AF474336.1 Dictyostelium discoideum ABC transporter ABCC.4 (abcC4) gene, partial cds.    42   9e-07  5
dna update 2007. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T6H8) RecName: Full=ABC transporter C family member 1; AltNam...   475   e-132
(Q54V86) RecName: Full=ABC transporter C family member 13; AltNa...   400   e-110
(Q54VJ0) RecName: Full=ABC transporter C family member 2; AltNam...   377   e-103
AY082376_1(AY082376|pid:none) Dictyostelium discoideum ABC trans...   322   3e-86
(Q54K24) RecName: Full=ABC transporter C family member 14; AltNa...   322   3e-86
(Q8T6H3) RecName: Full=ABC transporter C family member 6; AltNam...   321   3e-86
AF474339_1(AF474339|pid:none) Dictyostelium discoideum ABC trans...   269   2e-70
(Q54EK2) RecName: Full=ABC transporter C family member 7; AltNam...   269   2e-70
AF282773_1(AF282773|pid:none) Mus musculus strain C57L/J sub-fam...   259   2e-67
AJ315401_1(AJ315401|pid:none) Canis familiaris mRNA for multidru...   258   5e-67
protein update 2009. 6.27
PSORT 

 psg: 0.79  gvh: 0.36  alm: 0.12  top: 0.43  tms: 0.13  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHB717 is end
5' end seq. ID VHB717F
5' end seq. 
>VHB717F.Seq
AATTACACACCAACTTCAATTCATTCCATCAGCTGATCATATAGTTGTTGTTGATAATGG
TAAATTAGTTCAAGGTACTTATTCAGAATTAAAATCAAAAGGTATTGATTTCGAATCAAT
TATGAAAACAAAGAAATTAAATATTGATAATCAACAACAACAGCAACAGCACGAAAAAGA
AAATGATATAGTTTTAAGTGATGAAGATAGTAATAATAGTATTAAGAATAATAATAATAT
TTCAAATTTAATAGATATTGATGAAGTTATAAGTGATGAAAATGATTCAAATTTAATTGA
GAGATCAAAATTATTAGTAGATGAGGATAGAAATGAAGGATCAGTTAATTTAAGAGTTTA
TAAAGAATATTTTAAACATGGTTCATCTATACCATTGTTTATTATGACGTGCATAGTTTA
TATGATTAGCCAAATCATTTATCAAATGTCAGATTTTTGGTTATCAACATGGTCACAACG
TTCAATACCTGATAAAACAGATAAATATTATATATCAATTTATTTATTGTTTATAGTGGG
TTTTATAATTTTCTTGGTAATTAGATATTTTATGATGGCACATGTTACATTTTCAGCATC
AAAGAATTTACATCAATCGTTATTAAAATCGGTTGGTTTTGCAAGNNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID VHB717Z
3' end seq. 
>VHB717Z.Seq
NNNNNNNNNNTTGATTTTGATAATGATGATTATGATGGTTTTAAATTATCAAAGAAATGG
CTTACTAAAGGTGAAATTGAATTTAGAAATGTTGAAATTAAATATGGTCATTCAGGAGAA
TCAAGTTTAAAAAATTTCACATTAAAAATAAATCAAAGAGATCATATTGGTATTGTTGGT
AGAACTGGTGCAGGTAAGAGTACAATTGGTAATGGTTTGTTTCGTATGGTTGAATGTTCT
AAAGGTTCAATTTTAATTGATGGCGTTGACATTTCAAAGATTGGATTACACGAGTTAAGA
AGTTCACTTGGTATTGTCCCACAAGATCCATTCATTTTCTCTGGTACTATTCGTTTAAAT
ATCGATCCATTTAATAAATACACTGATAGTGAAATTTGGGTAGCTTTAGAAAAGGTTAAA
TTAAAATCAACAATTTCATCAATGCCATTAAAATTAGAAACTATGATAGAAGAAGGTGGT
GACGGTTTATCGTTTGGTCAAAAGCAATTACTTTGTTTATCAAGAACAATTTTAAAGAAT
TCTAAAGTAGTCCTAATGGATGAAGCTACCTCTGGTATAGATTATGTAACAAGTGATTTA
ATTAAACAAACTATTAATAATTGTTTTAAAAATTGTACAATGCTAACAATTGCACATAGA
CTCGATACAATCATTGATAGTACTAAAATCGCTGTTATTGATAAAGGTAAATTAATAGAA
TATGATACACCAAATAATCTCATTGAAAATCAAGAAT
Length of 3' end seq. 757
Connected seq. ID VHB717P
Connected seq. 
>VHB717P.Seq
AATTACACACCAACTTCAATTCATTCCATCAGCTGATCATATAGTTGTTGTTGATAATGG
TAAATTAGTTCAAGGTACTTATTCAGAATTAAAATCAAAAGGTATTGATTTCGAATCAAT
TATGAAAACAAAGAAATTAAATATTGATAATCAACAACAACAGCAACAGCACGAAAAAGA
AAATGATATAGTTTTAAGTGATGAAGATAGTAATAATAGTATTAAGAATAATAATAATAT
TTCAAATTTAATAGATATTGATGAAGTTATAAGTGATGAAAATGATTCAAATTTAATTGA
GAGATCAAAATTATTAGTAGATGAGGATAGAAATGAAGGATCAGTTAATTTAAGAGTTTA
TAAAGAATATTTTAAACATGGTTCATCTATACCATTGTTTATTATGACGTGCATAGTTTA
TATGATTAGCCAAATCATTTATCAAATGTCAGATTTTTGGTTATCAACATGGTCACAACG
TTCAATACCTGATAAAACAGATAAATATTATATATCAATTTATTTATTGTTTATAGTGGG
TTTTATAATTTTCTTGGTAATTAGATATTTTATGATGGCACATGTTACATTTTCAGCATC
AAAGAATTTACATCAATCGTTATTAAAATCGGTTGGTTTTGCAAG----------TTGAT
TTTGATAATGATGATTATGATGGTTTTAAATTATCAAAGAAATGGCTTACTAAAGGTGAA
ATTGAATTTAGAAATGTTGAAATTAAATATGGTCATTCAGGAGAATCAAGTTTAAAAAAT
TTCACATTAAAAATAAATCAAAGAGATCATATTGGTATTGTTGGTAGAACTGGTGCAGGT
AAGAGTACAATTGGTAATGGTTTGTTTCGTATGGTTGAATGTTCTAAAGGTTCAATTTTA
ATTGATGGCGTTGACATTTCAAAGATTGGATTACACGAGTTAAGAAGTTCACTTGGTATT
GTCCCACAAGATCCATTCATTTTCTCTGGTACTATTCGTTTAAATATCGATCCATTTAAT
AAATACACTGATAGTGAAATTTGGGTAGCTTTAGAAAAGGTTAAATTAAAATCAACAATT
TCATCAATGCCATTAAAATTAGAAACTATGATAGAAGAAGGTGGTGACGGTTTATCGTTT
GGTCAAAAGCAATTACTTTGTTTATCAAGAACAATTTTAAAGAATTCTAAAGTAGTCCTA
ATGGATGAAGCTACCTCTGGTATAGATTATGTAACAAGTGATTTAATTAAACAAACTATT
AATAATTGTTTTAAAAATTGTACAATGCTAACAATTGCACATAGACTCGATACAATCATT
GATAGTACTAAAATCGCTGTTATTGATAAAGGTAAATTAATAGAATATGATACACCAAAT
AATCTCATTGAAAATCAAGAAT
Length of connected seq. 1392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -