VHB716
Library VH
(Link to library)
Clone ID VHB716
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID VHB716P
(Link to Original site)
Representative DNA sequence
>VHB716 (VHB716Q) /CSM/VH/VHB7-A/VHB716Q.Seq.d/
TTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATA
GAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTC
AATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGG
GGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTT
CAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAA
GAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTAC
TTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATT
ATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATG
TATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTAT
TATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACAAAAGTTTATGGACTCAAAG
AGCATTTCACCATATAATACTCGTTXXXXXXXXXXACCAATTGACCCAAAGACTGAAGTA
TATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGGTTCACCAATGGAAGAA
TGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAAGATTCTTGAACTCTTT
GGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATGGCA
CGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAA
TGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCTGGT
ATTGTCACTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAATT
AGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAGCA
ACTGCAAATATTGATGCCTCAATCAAATTATTCGATGAATATACTCATGTCAATGAAGAA
TTCCTCGCCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAA
GCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAACT
CAAGGTATGATCGATTCAATGATCACCAGATTTGGTAAAGATGATTCTGATATGTTATAA
AGCTTTTTATTAAATTTCCAAAAAATAAAATAATATAAAATAAAATAAAATAAAATAAAA
TAAAATATAAAATAAAATAAAATATAAAATAAAATAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
FNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNARESFNLLTEKEQLYAHHISVACWW
GSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNIVSEEEYSDLLSYAATFYGNMGNY
LSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCSELMYSLDKQVRELGIDGNGISTY
YSPNITKVEIEKVQKFMDSKSISPYNTR---

---PIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKAE
DVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTAD
DVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIVL
AKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDSDML*sfllnfqki
k*ykik*nkik*nik*nki*nkik


Translated Amino Acid sequence (All Frames)
Frame A:
FNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNARESFNLLTEKEQLYAHHISVACWW
GSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNIVSEEEYSDLLSYAATFYGNMGNY
LSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCSELMYSLDKQVRELGIDGNGISTY
YSPNITKVEIEKVQKFMDSKSISPYNTR---

---tn*pkd*si*iw*nl*qcfqiigftngrm*srmlwylfitr*kds*tlwfhrskes*
rcllcqlvdygtcwclcigil*stk*rctr*metssyasqilyfnniltfwychfrqdcr
rcncqt**k*n*rywc*scw*fpq*inglqsncky*clnqiir*iyscq*riprh*rysf
g*ketkkgicsssyisqfkw*slssrf**lnsrydrfndhqiw*r*f*yviklfikfpkn
kii*nkik*nkikykik*nik*nki

Frame B:
likdfiqqii**cqyhhq**riilyqrrfqfiv*mlvnhsiy*qrknnsmpiilvlpvgg
vqkfvlvkhllkvvqslisfkifsqfki*nqllfqilflkkniliyyhmlqlfmviwvit
*vlvivnlfqefqkknyn*lliklmiiksmnigvnvvn*cih*ink*enwvlmvmvfqpi
ihqilqrlklkkykslwtqrafhhiilv---

---PIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKAE
DVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTAD
DVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIVL
AKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDSDML*sfllnfqki
k*ykik*nkik*nik*nki*nkik

Frame C:
**kilfnk*fnnvstiisnressctkgdsslsfkcs*iiqsinrerttlcpsy*ccllvg
fknlswsniy*kwsnl*slsksflnskfkinccskycf*rrif*fiiiccnflw*yg*ll
kfw***iysknfkrkitiny**s****sq*ilg*m**invfir*tskrigy*w*wyfnll
ftkyykg*n*kstkvyglkehfti*ys---

---qltqrlkyinlvklmtvfsnhwvhqwknveqnvvvsiyhqmkrflnslvsqiqrklk
mstmsig*lwhvlvsvhwnfivhqvkvhqvngdklickpdivf*qhsyvlvlsl*trlpt
m*lsnlikvklevlvlkllvissid*wftkqlqilmpqsnysmnilmsmknssplei*fw
lkrnqerylfklihisiqmvkfvfkilmtqlkv*siq*spdlvkmilicykafy*iskk*
nnik*nkik*nki*nkikykik*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB716 (VHB716Q) /CSM/VH/VHB7-A/VHB716Q.Seq.d/ 2595 0.0
VHK861 (VHK861Q) /CSM/VH/VHK8-C/VHK861Q.Seq.d/ 1396 0.0
VHH802 (VHH802Q) /CSM/VH/VHH8-A/VHH802Q.Seq.d/ 1396 0.0
VHH757 (VHH757Q) /CSM/VH/VHH7-C/VHH757Q.Seq.d/ 1396 0.0
VHC703 (VHC703Q) /CSM/VH/VHC7-A/VHC703Q.Seq.d/ 1396 0.0
VHA452 (VHA452Q) /CSM/VH/VHA4-C/VHA452Q.Seq.d/ 1396 0.0
AHO251 (AHO251Q) /CSM/AH/AHO2-C/AHO251Q.Seq.d/ 1396 0.0
AHK344 (AHK344Q) /CSM/AH/AHK3-B/AHK344Q.Seq.d/ 1396 0.0
AHH166 (AHH166Q) /CSM/AH/AHH1-C/AHH166Q.Seq.d/ 1396 0.0
AHF561 (AHF561Q) /CSM/AH/AHF5-C/AHF561Q.Seq.d/ 1396 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 1380 0.0 1
AA831227|AA831227.1 oc63f04.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1354399 3', mRNA sequence. 52 0.044 1
AC100821|AC100821.2 Homo sapiens chromosome 8, clone RP11-30L15, complete sequence. 52 0.044 1
CU407236|CU407236.1 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-418F10. 44 0.13 5
AC079335|AC079335.2 Homo sapiens chromosome 8 clone RP11-410P17 map 8, LOW-PASS SEQUENCE SAMPLING. 50 0.17 1
BZ401084|BZ401084.1 EINBU02TF EI_10_12_KB Entamoeba invadens genomic clone EINBU02, DNA sequence. 42 0.22 2
BZ387380|BZ387380.1 EINAB18TR EI_10_12_KB Entamoeba invadens genomic clone EINAB18, DNA sequence. 42 0.24 2
AC148816|AC148816.3 Medicago truncatula chromosome 7 clone mth2-16i24, complete sequence. 38 0.57 7
AC148816|AC148816.3 Medicago truncatula chromosome 7 clone mth2-16i24, complete sequence. 38 0.57 7
BQ475706|BQ475706.1 cicindela1d10.b.2 Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela1d10 5', mRNA sequence. 48 0.69 1
dna update 2007. 4. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3; EC=3.4.1... 187 8e-46
X91067_8(X91067|pid:none) S.cerevisiae DNA from chromosome XV (c... 179 3e-43
(Q08225) RecName: Full=Probable dipeptidyl-peptidase 3; ... 179 3e-43
BC043905_1(BC043905|pid:none) Xenopus laevis dipeptidylpeptidase... 176 1e-42
BC077244_1(BC077244|pid:none) Xenopus laevis dipeptidylpeptidase... 176 2e-42
AY051625_1(AY051625|pid:none) Drosophila melanogaster GH27411 fu... 172 3e-41
BT001516_1(BT001516|pid:none) Drosophila melanogaster LP10840 fu... 172 3e-41
(Q9VHR8) RecName: Full=Dipeptidyl-peptidase 3; EC=3.4.1... 172 3e-41
BC075771_1(BC075771|pid:none) Danio rerio dipeptidylpeptidase 3,... 171 5e-41
AM502223_97(AM502223|pid:none) Leishmania infantum chromosome 5. 169 2e-40
protein update 2009. 6.27
PSORT

psg: 0.89 gvh: 0.35 alm: 0.39 top: 0.37 tms: 0.00 mit: 0.42 mip: 0.02
nuc: 0.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VHB716 is nuc

5' end seq. ID VHB716F
5' end seq.
>VHB716F.Seq
TTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATA
GAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTC
AATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGG
GGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTT
CAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAA
GAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTAC
TTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATT
ATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATG
TATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTAT
TATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACAAAAGTTTATGGACTCAAAG
AGCATTTCACCATATAATACTCGTTNNNNNNNNNN
Length of 5' end seq. 635
3' end seq. ID VHB716Z
3' end seq.
>VHB716Z.Seq
NNNNNNNNNNACCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTATGACA
GTGTTTTCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCT
ATTTATCACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTG
AAGATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAAT
TTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCA
GATATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCG
ACGATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTG
GTGATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCA
AATTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTT
TGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATG
GTAAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAATGATCA
CCAGATTTGGTAAAGATGATTCTGATATGTTATAAAGCTTTTTATTAAATTTCCAAAAAA
TAAAATAATATAAAATAAAATAAAATAAAATAAAATAAAATATAAAATAAAATAAAATAT
AAAATAAAATAAAATA
Length of 3' end seq. 796
Connected seq. ID VHB716P
Connected seq.
>VHB716P.Seq
TTTAATAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATA
GAGAATCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTC
AATCTATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGG
GGTTCAAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTT
CAAAATCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAA
GAAGAATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTAC
TTAAGTTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATT
ATTAATAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATG
TATTCATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTAT
TATTCACCAAATATTACAAAGGTTGAAATTGAAAAAGTACAAAAGTTTATGGACTCAAAG
AGCATTTCACCATATAATACTCGTT----------ACCAATTGACCCAAAGACTGAAGTA
TATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGGTTCACCAATGGAAGAA
TGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAAGATTCTTGAACTCTTT
GGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATGGCA
CGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAA
TGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCTGGT
ATTGTCACTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAATT
AGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAGCA
ACTGCAAATATTGATGCCTCAATCAAATTATTCGATGAATATACTCATGTCAATGAAGAA
TTCCTCGCCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAA
GCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAACT
CAAGGTATGATCGATTCAATGATCACCAGATTTGGTAAAGATGATTCTGATATGTTATAA
AGCTTTTTATTAAATTTCCAAAAAATAAAATAATATAAAATAAAATAAAATAAAATAAAA
TAAAATATAAAATAAAATAAAATATAAAATAAAATAAAATA
Length of connected seq. 1411
Full length Seq ID -
Full length Seq. -
Length of full length seq. -