NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB688
Library VH
(Link to library)
Clone ID VHB688
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16303-1
Original site URL
Representative seq. ID VHB688P
(Link to Original site)
Representative DNA sequence 
>VHB688 (VHB688Q) /CSM/VH/VHB6-D/VHB688Q.Seq.d/
ATTTTTAAATATCAAAAAAAAAAACTCAAAAAATAATAGAGTATACNCAATTTATTATTA
TTNGATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTNGATNGNGTNCATA
TAAAAAGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAAT
AATAAAATATATTTTAAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAA
ATCTNCNACAATAATAATAGTTAAAATAATAAAANGTCAAATCAAATANCXXXXXXXXXX
TGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCA
AGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTC
CTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAA
CTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATT
ACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTA
TTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAAC
AACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGT
AATATTGNCTGTTCAAATTGGTGANCCTAAACAATCAGAAGGTCAACAAANTGTCAGC
sequence update 2002.10.25
Translated Amino Acid sequence 
flnikkknsknnrvyxiyyyxiiviil*iythlxvxxxxykkllnk*iiiiiiixiliii
ikyilkkkikxk*KXXSXIKSXTIIIVKIIKXQIKX---

---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIXCSNW*x*tirrstxcq
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkyqkkklkk**sixnlllxdhcnyiinlysfxgxxxxi*kvik*innnnnnnxninnn
nkiyfkkknkxkikxxvxnkixxnnns*nnkxsnqi---

---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIXCSNW*x*tirrstxcq

Frame B:
flnikkknsknnrvyxiyyyxiiviil*iythlxvxxxxykkllnk*iiiiiiixiliii
ikyilkkkikxk*KXXSXIKSXTIIIVKIIKXQIKX---

---ghlqinkqqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkek
yinlqlqhtkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasr
igttilnsl*ilnsvqrr*rsavilxvqigxpkqsegqqxvs

Frame C:
f*iskkktqkiieytqfiiixsl*lyykfiliyxxdxvhiksy*ink******xqy****
*nif*kkk*x*nknxxp**nlxq***lk**xvksnx---

---dtyk*tnsnsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrkn
i*tynysipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklqe
leqry*ihckf*iqfkedegql*yxlfklvxlnnqkvnkxs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB688 (VHB688Q) /CSM/VH/VHB6-D/VHB688Q.Seq.d/                        888   0.0
VHP745 (VHP745Q) /CSM/VH/VHP7-B/VHP745Q.Seq.d/                        870   0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/                        870   0.0
VHP534 (VHP534Q) /CSM/VH/VHP5-B/VHP534Q.Seq.d/                        870   0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/                        870   0.0
VHM669 (VHM669Q) /CSM/VH/VHM6-C/VHM669Q.Seq.d/                        870   0.0
VHM661 (VHM661Q) /CSM/VH/VHM6-C/VHM661Q.Seq.d/                        870   0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/                        870   0.0
VHK765 (VHK765Q) /CSM/VH/VHK7-C/VHK765Q.Seq.d/                        870   0.0
VHK661 (VHK661Q) /CSM/VH/VHK6-C/VHK661Q.Seq.d/                        870   0.0
own update 2004. 8. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BB436170|BB436170.1 Mus musculus adult pancreas Islet cells cDNA, RIKEN full-length(from clone DKFZp564E1082).    46   1.5    1
AC027268|AC027268.2 Homo sapiens chromosome 11 clone RP11-268B20 map 11, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46   1.5    1
AC167050|AC167050.2 Bos taurus clone CH240-108E22, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    46   1.5    1
AC012216|AC012216.3 Homo sapiens chromosome 8 clone RP11-346C1 map 8, WORKING DRAFT SEQUENCE, 10 unordered pieces.    46   1.5    1
AQ438483|AQ438483.1 HS_5115_B2_A01_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=691 Col=2 Row=B, DNA sequence.    46   1.5    1
CC588869|CC588869.1 CH240_387A10.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_387A10, genomic survey sequence.    46   1.5    1
AM180355|AM180355.1 Clostridium difficile 630 complete genome.     46   1.5    1
AP002791|AP002791.3 Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete sequences.    46   1.5    1
AC105957|AC105957.13 Mus musculus chromosome 18, clone RP24-303O20, complete sequence.    44   2.2    3
AM429459|AM429459.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X182648.47, clone ENTAV 115.    32   3.2    2
dna update 2007. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...    72   3e-11
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM...    71   3e-11
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080...    71   3e-11
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416....    71   4e-11
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...    71   4e-11
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...    70   6e-11
AC146568_18(AC146568|pid:none) Medicago truncatula clone mth2-10...    70   1e-10
CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...    69   2e-10
U83410_1(U83410|pid:none) Human CUL-2 (cul-2) mRNA, complete cds.      69   2e-10
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...    69   2e-10
protein update 2009. 6.27
PSORT 

 psg: 0.81  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHB688 is nuc
5' end seq. ID VHB688F
5' end seq. 
>VHB688F.Seq
ATTTTTAAATATCAAAAAAAAAAACTCAAAAAATAATAGAGTATACNCAATTTATTATTA
TTNGATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTNGATNGNGTNCATA
TAAAAAGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAAT
AATAAAATATATTTTAAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAA
ATCTNCNACAATAATAATAGTTAAAATAATAAAANGTCAAATCAAATANCNNNNNNNNNN
Length of 5' end seq. 300
3' end seq. ID VHB688Z
3' end seq. 
>VHB688Z.Seq
NNNNNNNNNNTGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGA
AATGTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGT
TTTAACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAA
AATATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGC
AGATAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCG
TCTTCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAA
GAATTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAA
GGTCAGCTGTAATATTGNCTGTTCAAATTGGTGANCCTAAACAATCAGAAGGTCAACAAA
NTGTCAGC
Length of 3' end seq. 488
Connected seq. ID VHB688P
Connected seq. 
>VHB688P.Seq
ATTTTTAAATATCAAAAAAAAAAACTCAAAAAATAATAGAGTATACNCAATTTATTATTA
TTNGATCATTGTAATTATATTATAAATTTATACTCATTTATNGGTTNGATNGNGTNCATA
TAAAAAGTTATTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAAT
AATAAAATATATTTTAAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAA
ATCTNCNACAATAATAATAGTTAAAATAATAAAANGTCAAATCAAATANC----------
TGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCA
AGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTC
CTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAA
CTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATT
ACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTA
TTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAAC
AACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGT
AATATTGNCTGTTCAAATTGGTGANCCTAAACAATCAGAAGGTCAACAAANTGTCAGC
Length of connected seq. 768
Full length Seq ID -
Full length Seq. -
Length of full length seq. -