VHB686
Library VH
(Link to library)
Clone ID VHB686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB686 (VHB686Q) /CSM/VH/VHB6-D/VHB686Q.Seq.d/
AGAAGATTATAATATCAAATTTGATGTCTTACAAACATATGGTGTTGGTNNTCATTACTC
ATATTNAANTGTTATTTTTACAACTTGTAATTATACTATTCCTTGAGGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
KIIISNLMSYKHMVLVXITHIXXLFLQLVIILFLE---


Translated Amino Acid sequence (All Frames)
Frame A:
rrl*yqi*cltniwcwxsllixxcyfynl*lyysl---


Frame B:
edynikfdvlqtygvgxhysyxxvifttcnytip*---


Frame C:
KIIISNLMSYKHMVLVXITHIXXLFLQLVIILFLE---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB686 (VHB686Q) /CSM/VH/VHB6-D/VHB686Q.Seq.d/ 190 3e-48
VHQ143 (VHQ143Q) /CSM/VH/VHQ1-B/VHQ143Q.Seq.d/ 184 2e-46
VHP821 (VHP821Q) /CSM/VH/VHP8-A/VHP821Q.Seq.d/ 184 2e-46
VHP763 (VHP763Q) /CSM/VH/VHP7-C/VHP763Q.Seq.d/ 184 2e-46
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/ 184 2e-46
VHP510 (VHP510Q) /CSM/VH/VHP5-A/VHP510Q.Seq.d/ 184 2e-46
VHP239 (VHP239Q) /CSM/VH/VHP2-B/VHP239Q.Seq.d/ 184 2e-46
VHO766 (VHO766Q) /CSM/VH/VHO7-C/VHO766Q.Seq.d/ 184 2e-46
VHO645 (VHO645Q) /CSM/VH/VHO6-B/VHO645Q.Seq.d/ 184 2e-46
VHO542 (VHO542Q) /CSM/VH/VHO5-B/VHO542Q.Seq.d/ 184 2e-46

own update 2002.12.22
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EK277482|EK277482.1 1095462282970 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005814165 3', genomic survey sequence. 44 0.74 1
EJ362419|EJ362419.1 1092963691990 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002381931 3', genomic survey sequence. 44 0.74 1
CP000350|CP000350.1 Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1, complete sequence. 44 0.74 1
CP000348|CP000348.1 Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. 44 0.74 1
AC120307|AC120307.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence. 38 2.3 2
BI600837|BI600837.1 603244253F1 NIH_MGC_96 Homo sapiens cDNA clone IMAGE:5286637 5', mRNA sequence. 42 2.9 1
BX267359|BX267359.4 Gallus gallus multi-tissues normalized and once-subtracted cDNA library (gcal) clone gcal0016.b.07, 3prim end (M13F primer). 42 2.9 1
AC153238|AC153238.2 Bos taurus clone CH240-20F22, *** SEQUENCING IN PROGRESS ***, 37 unordered pieces. 42 2.9 1
AM644969|AM644969.1 Entamoeba moshkovskii FIC GSS, clone mosh019c11.p1k. 42 2.9 1
DH208113|DH208113.1 Oryzias latipes Fosmid clone:GOLWFno530_f11, forward end. 42 2.9 1
dna update 2007. 4. 6
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 135,330,351
protein update 2009. 6.27
PSORT

psg: 0.90 gvh: 0.45 alm: 0.25 top: 0.33 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.28 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VHB686 is end

5' end seq. ID VHB686F
5' end seq.
>VHB686F.Seq
AGAAGATTATAATATCAAATTTGATGTCTTACAAACATATGGTGTTGGTNNTCATTACTC
ATATTNAANTGTTATTTTTACAACTTGTAATTATACTATTCCTTGAGGNNNNNNNNNN
Length of 5' end seq. 118
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -