VHB685
Library VH
(Link to library)
Clone ID VHB685
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHB685P
(Link to Original site)
Representative DNA sequence
>VHB685 (VHB685Q) /CSM/VH/VHB6-D/VHB685Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATXXXXXXXXXXTNGTCAATGTC
ACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGNTGGTGCTTTCCAATGG
GCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGANAGGTATCCGTTTCAATCTTTAN
GATGTCACCCTCCACANTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCT
CGTCGTGTACTCTATGCTGCTGAATTAANTGCCTCCCCAACTCTNTTANAACCAATNTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGT
CGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAA
GCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCC
GGTCAAGNTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAA
GATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAA
ATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCNCTTTGAGTT
TTC
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---

---VNVTKGVQYLNEIKDSFXGAFQWATKEGVVCDENMXGIRFNLXDVTLHXDAIHRGGG
QIIPTARRVLYAAELXASPTLLXPXYLVEITAPENAIGGIYSVLNRRXGIVIGEERRIGS
PLFSVKAHLPVLESFGFTADLRSHTAGQXFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*val*vf


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy---

---xsmspkvfni*mklkilsxvlsngppkkvlfvmkt*xvsvsifxmspstxmpstevv
vkssqllvvysmlln*xppqlxxnqxt**kllpqktllvvftlysivvxvlllvknvvsv
physlskliyqy*npsvspliyvptlpvkxshnvssiiglqlvlstkirkplksl*pper
ekv*pqksqiltnstknskqfksxfef

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsfl---

---xqchqrcsife*n*rffrwcfpmghqrrccl**khxrypfqslxchppx*chpqrww
snhpncssctlcc*ixclpnsxxtnxlsrnycprkrywwyllctqssxrycyw*rtsyrf
piilcqssftsirilrfhr*ftfphcrsxfptmclrslgfnwccqqr*esh*srfshqke
krfsprnprs*qiprktlnnlsrxlsf

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---

---VNVTKGVQYLNEIKDSFXGAFQWATKEGVVCDENMXGIRFNLXDVTLHXDAIHRGGG
QIIPTARRVLYAAELXASPTLLXPXYLVEITAPENAIGGIYSVLNRRXGIVIGEERRIGS
PLFSVKAHLPVLESFGFTADLRSHTAGQXFPQCVFDHWASIGVVNKDKKATEVALATRKR
KGLAPEIPDLDKFHEKL*ti*val*vf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ470 (VHQ470Q) /CSM/VH/VHQ4-C/VHQ470Q.Seq.d/ 1148 0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/ 1148 0.0
VHP487 (VHP487Q) /CSM/VH/VHP4-D/VHP487Q.Seq.d/ 1148 0.0
VHP455 (VHP455Q) /CSM/VH/VHP4-C/VHP455Q.Seq.d/ 1148 0.0
VHP408 (VHP408Q) /CSM/VH/VHP4-A/VHP408Q.Seq.d/ 1148 0.0
VHP182 (VHP182Q) /CSM/VH/VHP1-D/VHP182Q.Seq.d/ 1148 0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/ 1148 0.0
VHO787 (VHO787Q) /CSM/VH/VHO7-D/VHO787Q.Seq.d/ 1148 0.0
VHO504 (VHO504Q) /CSM/VH/VHO5-A/VHO504Q.Seq.d/ 1148 0.0
VHO447 (VHO447Q) /CSM/VH/VHO4-B/VHO447Q.Seq.d/ 1148 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1029 0.0 3
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 5e-62 8
Y09664|Y09664.1 C.albicans EFT2 gene. 78 6e-61 8
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 70 6e-57 10
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 64 3e-55 9
AF534908|AF534908.2 Tetrahymena thermophila elongation factor 2 gene, complete cds. 84 2e-42 5
AF107290|AF107290.1 Candida lusitaniae elongation factor 2 (EFT2) gene, partial cds. 62 7e-39 7
EH015431|EH015431.1 USDA-FP_188032 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt081_G08 5', mRNA sequence. 70 3e-36 4
EH012247|EH012247.1 USDA-FP_185167 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt044_H07 5', mRNA sequence. 70 4e-36 4
AR550596|AR550596.1 Sequence 5727 from patent US 6747137. 72 8e-36 5
dna update 2007. 4. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 239 2e-61
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 238 2e-61
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ... 237 5e-61
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 237 7e-61
AF544973_1(AF544973|pid:none) Ctenopharyngodon idella elongation... 236 9e-61
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 236 1e-60
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 234 3e-60
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 234 3e-60
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 234 3e-60
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 234 3e-60
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHB685 is cyt

5' end seq. ID VHB685F
5' end seq.
>VHB685F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATNNNNNNNNNN
Length of 5' end seq. 529
3' end seq. ID VHB685Z
3' end seq.
>VHB685Z.Seq
NNNNNNNNNNTNGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCT
TTCGNTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGANA
GGTATCCGTTTCAATCTTTANGATGTCACCCTCCACANTGATGCCATCCACAGAGGTGGT
GGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAANTGCCTCCCCA
ACTCTNTTANAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGT
ATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCGGT
TCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCT
GATTTACGTTCCCACACTGCCGGTCAAGNTTTCCCACAATGTGTCTTCGATCATTGGGCT
TCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAG
AGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACA
ATTTAAGTCGCNCTTTGAGTTTTC
Length of 3' end seq. 624
Connected seq. ID VHB685P
Connected seq.
>VHB685P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTAT----------TNGTCAATGTC
ACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGNTGGTGCTTTCCAATGG
GCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGANAGGTATCCGTTTCAATCTTTAN
GATGTCACCCTCCACANTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCT
CGTCGTGTACTCTATGCTGCTGAATTAANTGCCTCCCCAACTCTNTTANAACCAATNTAC
TTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGT
CGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAA
GCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCC
GGTCAAGNTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAA
GATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAA
ATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCNCTTTGAGTT
TTC
Length of connected seq. 1133
Full length Seq ID -
Full length Seq. -
Length of full length seq. -