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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB673
Library VH
(Link to library)
Clone ID VHB673
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16196-1
Original site URL
Representative seq. ID VHB673P
(Link to Original site)
Representative DNA sequence 
>VHB673 (VHB673Q) /CSM/VH/VHB6-D/VHB673Q.Seq.d/
CTGTTGGCCTACTGGTAACATTGCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAG
ACAGCAGGACGGTGGCCATGGNAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAAAAGCTTG
AATGTGAATTCGAGTGGAGTNGNCTTTAGTGCAGATCTTGATGGNAXXXXXXXXXXTAGT
AGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGA
CAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAA
TCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGT
TGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAACCGCTGTTACACTGCAGT
TTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAAC
TCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCA
GTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTCGTACGACAAAGAATTATTCAA
AATGACCCAAAAGAGACGTAATCACGGTAGATCAAAACACGGTCGTGGTAGTGTTCCATA
CATCAGATGCACCAACTGTGCTAGATGTGTCCCAAAAGACAAAGCTGTCAAGAGATTCTA
CATTAGACCAATCGTCGAAAATGCTGCCGTTAAGGATATTTCAGATCAAGGTGTTTTCAA
CGTCAAAGGTTACAAATTCCCAAGAACCTACGTTAAATCCCAATACTGTATTTCATGTGC
TATCCACAGTCACATCGTCCGTGTTCGTTCAGTTGCCGACAGAAAAATCAGAACCAGACC
ATCCCGTCCAGGTGTCAAGAAACCAACTGCTGCCAAATAAAANNATTAACAATAAATTTC
TT
sequence update 2002.10.25
Translated Amino Acid sequence 
llayw*hctnryhkrc*fiktagrwpwxvgir*gvcnnspakwtspeng*r*qwmvdaqs
lkeviilltcrka*r*RKSLNVNSSGVXFSADLDG---

---SSMI*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*
vtlgcwwgttfnfkpyd*pllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*as
e*rsvtrg*gfsissyfvrqriiqndpket*sr*iktrsw*csihqmhqlc*mcpkrqsc
qeilh*tnrrkccr*gyfrsrcfqrqrlqipknlr*ipilyfmcypqshrpcsfscrqkn
qnqtipsrcqetnccqikxltinf
Translated Amino Acid sequence (All Frames) 
Frame A:
llayw*hctnryhkrc*fiktagrwpwxvgir*gvcnnspakwtspeng*r*qwmvdaqs
lkeviilltcrka*r*RKSLNVNSSGVXFSADLDG---

---**hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvv
gnirllvgdhfql*ti*ltavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsf
rvafsyeglrlfh*flfrttknysk*pkrdvitvdqntvvvvfhtsdaptvldvsqktkl
srdstldqsskmlplrifqikvfstskvtnsqeptlnpntvfhvlstvtssvfvqlptek
sepdhpvqvsrnqllpnkxinnkfl

Frame B:
cwptgnialidttkgvsslrqqdgghgksvsakecvtthlpnglalkmddassgwsmpnr
*kk**yf*rvgrregnvka*m*irvexxlvqilmx---

---SSMI*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*
vtlgcwwgttfnfkpyd*pllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*as
e*rsvtrg*gfsissyfvrqriiqndpket*sr*iktrsw*csihqmhqlc*mcpkrqsc
qeilh*tnrrkccr*gyfrsrcfqrqrlqipknlr*ipilyfmcypqshrpcsfscrqkn
qnqtipsrcqetnccqikxltinf

Frame C:
vgllvtlh**ipqkvlvh*dsrtvamxsryplrsv*qltcqmd*p*kwmtlavdgrcpiv
krsdntfnv*egvkvt*klecefewsxl*crs*w---

---va*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalececcr
*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*trccklp
ssvqlrgveafplvlisydkelfkmtqkrrnhgrskhgrgsvpyirctncarcvpkdkav
krfyirpivenaavkdisdqgvfnvkgykfprtyvksqyciscaihshivrvrsvadrki
rtrpsrpgvkkptaak*xx*q*is
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB673 (VHB673Q) /CSM/VH/VHB6-D/VHB673Q.Seq.d/                       2050   0.0
VHJ767 (VHJ767Q) /CSM/VH/VHJ7-C/VHJ767Q.Seq.d/                        789   0.0
CFH184 (CFH184Q) /CSM/CF/CFH1-D/CFH184Q.Seq.d/                        789   0.0
AHI666 (AHI666Q) /CSM/AH/AHI6-C/AHI666Q.Seq.d/                        789   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                        787   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                        787   0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/                        787   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                        785   0.0
VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/                        785   0.0
SFC338 (SFC338Q) /CSM/SF/SFC3-B/SFC338Q.Seq.d/                        785   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   781   0.0    3
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   765   0.0    3
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   276   0.0    8
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      381   e-129  2
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence.   155   e-112  6
DQ340388|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   172   2e-77  5
DQ442709|DQ442709.1 Botryozyma nematodophila 26S ribosomal RNA gene, partial sequence.   103   8e-55  5
X75631|X75631.1 P.megasperma gene for 28S ribosomal RNA.          113   6e-54  5
DQ641239|DQ641239.1 Metschnikowia hawaiiensis external transcribed spacer, partial sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and intergenic spacer, partial sequence.   105   1e-53  5
AY048158|AY048158.1 Saccharomyces unisporus NRRL Y-1556 26S ribosomal RNA gene, partial sequence.   100   1e-53  5
dna update 2007. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TL8) RecName: Full=40S ribosomal protein S26;                     234   4e-60
DQ413194_1(DQ413194|pid:none) Acyrthosiphon pisum isolate WHAP00...   141   4e-32
AY857483_1(AY857483|pid:none) Suberites domuncula S26 mRNA, comp...   137   6e-31
AY099673_1(AY099673|pid:none) Arabidopsis thaliana 40S ribosomal...   137   8e-31
GM963134_1(GM963134|pid:none) Sequence 10088 from Patent WO20081...   135   2e-30
EU139193_1(EU139193|pid:none) Flustra foliacea putative 40S ribo...   135   2e-30
GM960533_1(GM960533|pid:none) Sequence 7487 from Patent WO200814...   135   2e-30
GM960535_1(GM960535|pid:none) Sequence 7489 from Patent WO200814...   135   2e-30
GM960537_1(GM960537|pid:none) Sequence 7491 from Patent WO200814...   135   2e-30
GM960545_1(GM960545|pid:none) Sequence 7499 from Patent WO200814...   134   7e-30
protein update 2009. 6.27
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.57  top: 0.20  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHB673 is cyt
5' end seq. ID VHB673F
5' end seq. 
>VHB673F.Seq
CTGTTGGCCTACTGGTAACATTGCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAG
ACAGCAGGACGGTGGCCATGGNAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAAAAGCTTG
AATGTGAATTCGAGTGGAGTNGNCTTTAGTGCAGATCTTGATGGNANNNNNNNNNN
Length of 5' end seq. 296
3' end seq. ID VHB673Z
3' end seq. 
>VHB673Z.Seq
NNNNNNNNNNTAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCT
GTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACG
CCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGT
AGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAACCGC
TGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCC
TCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTT
CCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTCGTACGAC
AAAGAATTATTCAAAATGACCCAAAAGAGACGTAATCACGGTAGATCAAAACACGGTCGT
GGTAGTGTTCCATACATCAGATGCACCAACTGTGCTAGATGTGTCCCAAAAGACAAAGCT
GTCAAGAGATTCTACATTAGACCAATCGTCGAAAATGCTGCCGTTAAGGATATTTCAGAT
CAAGGTGTTTTCAACGTCAAAGGTTACAAATTCCCAAGAACCTACGTTAAATCCCAATAC
TGTATTTCATGTGCTATCCACAGTCACATCGTCCGTGTTCGTTCAGTTGCCGACAGAAAA
ATCAGAACCAGACCATCCCGTCCAGGTGTCAAGAAACCAACTGCTGCCAAATAAAANNAT
TAACAATAAATTTCTT
Length of 3' end seq. 796
Connected seq. ID VHB673P
Connected seq. 
>VHB673P.Seq
CTGTTGGCCTACTGGTAACATTGCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAG
ACAGCAGGACGGTGGCCATGGNAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAAAAGCTTG
AATGTGAATTCGAGTGGAGTNGNCTTTAGTGCAGATCTTGATGGNA----------TAGT
AGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGA
CAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAA
TCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGT
TGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAACCGCTGTTACACTGCAGT
TTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAAC
TCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCA
GTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTCGTACGACAAAGAATTATTCAA
AATGACCCAAAAGAGACGTAATCACGGTAGATCAAAACACGGTCGTGGTAGTGTTCCATA
CATCAGATGCACCAACTGTGCTAGATGTGTCCCAAAAGACAAAGCTGTCAAGAGATTCTA
CATTAGACCAATCGTCGAAAATGCTGCCGTTAAGGATATTTCAGATCAAGGTGTTTTCAA
CGTCAAAGGTTACAAATTCCCAAGAACCTACGTTAAATCCCAATACTGTATTTCATGTGC
TATCCACAGTCACATCGTCCGTGTTCGTTCAGTTGCCGACAGAAAAATCAGAACCAGACC
ATCCCGTCCAGGTGTCAAGAAACCAACTGCTGCCAAATAAAANNATTAACAATAAATTTC
TT
Length of connected seq. 1072
Full length Seq ID -
Full length Seq. -
Length of full length seq. -