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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB666
Library VH
(Link to library)
Clone ID VHB666
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12649-1|Contig-U16394-1
Original site URL
Representative seq. ID VHB666P
(Link to Original site)
Representative DNA sequence 
>VHB666 (VHB666Q) /CSM/VH/VHB6-C/VHB666Q.Seq.d/
AAAAAAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATAAT
AACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATAAT
AATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAATA
AAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAANGGAAAAA
ATAAAAAAAAAAATANATTTTTTTTTTAAAAAATTAAAANTTTAAAAAAAAAAXXXXXXX
XXXTTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCACAATTGGACACCTC
AAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAAGATTGGGAATGCA
AAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACACTCAGTA
AGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGTAGTCTCT
ACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTAACTCGTG
TTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnnsnnnnk
iiiieiisi*kinkikxgknkkknxfff*KIKXLKKK---

---QFTMQMTLGVQCLHNWTPQIVHRDFKSLNLLVNEDWECKVSDFGLSRFNTADNLETL
SKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWELVTRVINGEYSRPYSEYSHIK
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkptiaiiiiiiinnnnnnnnkivtpinnninnnnnnnnnnnkikniiiiiviiviiii
k****k*fqfkk*ik*kxekikkkixfffkklkx*kk---

---fnspck*hwvysvftighlklytetlrv*ifwsmkignakfqilvlvvlippii*kh
svrfvvplpivhlksp*vmvvstlpnlistvlvssfgn**lvlsmvntlvptvniltsk

Frame B:
kknqq*q**l****iiiiiitik**hq*iiiliiiiiiiiiiik*ki*************
nnnnrnnfnlknk*nkkxkk*kkkxifflkn*xfkkk---

---sihhandigctvssqldtsnctqrl*efksfgq*rlgmqsfrfws*sf*yrr*frnt
q*dswylcllft*srrr*w*slhyqi*ylqywyrllgisnscyqw*ilsslq*ifshqn

Frame C:
kktnnsnnnynnnk******q*nsntnk**y************nkkynnnnsnnsnnnnk
iiiieiisi*kinkikxgknkkknxfff*KIKXLKKK---

---QFTMQMTLGVQCLHNWTPQIVHRDFKSLNLLVNEDWECKVSDFGLSRFNTADNLETL
SKIRGTFAYCSPEVAVGNGSLYTTKSDIYSIGIVFWELVTRVINGEYSRPYSEYSHIK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB666 (VHB666Q) /CSM/VH/VHB6-C/VHB666Q.Seq.d/                        692   0.0
SHK887 (SHK887Q) /CSM/SH/SHK8-D/SHK887Q.Seq.d/                        692   0.0
SHE857 (SHE857Q) /CSM/SH/SHE8-C/SHE857Q.Seq.d/                        692   0.0
SHB434 (SHB434Q) /CSM/SH/SHB4-B/SHB434Q.Seq.d/                        692   0.0
CHS225 (CHS225Q) /CSM/CH/CHS2-B/CHS225Q.Seq.d/                        692   0.0
CHP295 (CHP295Q) /CSM/CH/CHP2-D/CHP295Q.Seq.d/                        692   0.0
SHF208 (SHF208Q) /CSM/SH/SHF2-A/SHF208Q.Seq.d/                        686   0.0
AHF423 (AHF423Q) /CSM/AH/AHF4-A/AHF423Q.Seq.d/                        684   0.0
AHC678 (AHC678Q) /CSM/AH/AHC6-D/AHC678Q.Seq.d/                        678   0.0
SHD120 (SHD120Q) /CSM/SH/SHD1-A/SHD120Q.Seq.d/                        672   0.0
own update 2002.12.22
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    50   2e-08  2
DW018299|DW018299.1 EST1227260 MTY Medicago truncatula cDNA clone MTYB479, mRNA sequence.    48   0.31   1
CX532261|CX532261.1 s13dNF67C12MJ086_270818 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.    48   0.31   1
CX529651|CX529651.1 s13dNF50A04MJ022_245349 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.    48   0.31   1
AI974331|AI974331.1 T110180e KV0 Medicago truncatula cDNA clone pKV0-1I16, mRNA sequence.    48   0.31   1
BQ164795|BQ164795.1 EST610664 KVKC Medicago truncatula cDNA clone pKVKC-1E8, mRNA sequence.    48   0.31   1
BM813350|BM813350.1 EST591443 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-8H12, mRNA sequence.    48   0.31   1
BG646682|BG646682.1 EST508301 HOGA Medicago truncatula cDNA clone pHOGA-9D1 5' end, mRNA sequence.    48   0.31   1
BG645865|BG645865.1 EST507484 KV3 Medicago truncatula cDNA clone pKV3-47F12 5' end, mRNA sequence.    48   0.31   1
BG453581|BG453581.1 NF092A07LF1F1050 Developing leaf Medicago truncatula cDNA clone NF092A07LF 5', mRNA sequence.    48   0.31   1
dna update 2007. 4. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XX5) RecName: Full=Probable serine/threonine-protein kinase ...   242   8e-63
(Q55GG4) RecName: Full=Probable serine/threonine-protein kinase ...   137   4e-31
(Q54HC6) RecName: Full=Ankyrin repeat-containing protein kinase ...   125   1e-27
(Q54G28) RecName: Full=Probable tyrosine-protein kinase DDB_G029...   122   9e-27
(Q54RR9) RecName: Full=Probable serine/threonine-protein kinase ...   107   2e-22
(Q86HG9) RecName: Full=Probable serine/threonine-protein kinase ...    92   2e-17
AC159538_19(AC159538|pid:none) Medicago truncatula clone mth2-48...    84   4e-15
AY687390_1(AY687390|pid:none) Glycine max putative receptor-like...    84   5e-15
FB781323_1(FB781323|pid:none) Sequence 596 from Patent WO2008034...    84   5e-15
BT070386_1(BT070386|pid:none) Picea sitchensis clone WS02726_F21...    83   8e-15
protein update 2009. 6.27
PSORT 

 psg: 0.88  gvh: 0.34  alm: 0.40  top: 0.33  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHB666 is cyt
5' end seq. ID VHB666F
5' end seq. 
>VHB666F.Seq
AAAAAAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATAAT
AACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATAAT
AATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAATA
AAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAANGGAAAAA
ATAAAAAAAAAAATANATTTTTTTTTTAAAAAATTAAAANTTTAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 303
3' end seq. ID VHB666Z
3' end seq. 
>VHB666Z.Seq
NNNNNNNNNNTTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCACAATTGG
ACACCTCAAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAAGATTGG
GAATGCAAAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACA
CTCAGTAAGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGT
AGTCTCTACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTA
ACTCGTGTTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAAT
Length of 3' end seq. 359
Connected seq. ID VHB666P
Connected seq. 
>VHB666P.Seq
AAAAAAAAACCAACAATAGCAATAATAATTATAATAATAATAAATAATAATAATAATAAT
AACAATAAAATAGTAACACCAATAAATAATAATATTAATAATAATAATAATAATAATAAT
AATAATAATAAAATAAAAAATATAATAATAATAATAGTAATAATAGTAATAATAATAATA
AAATAATAATAATAGAAATAATTTCAATTTAAAAAATAAATAAAATAAAAAANGGAAAAA
ATAAAAAAAAAAATANATTTTTTTTTTAAAAAATTAAAANTTTAAAAAAAAAA-------
---TTCAATTCACCATGCAAATGACATTGGGTGTACAGTGTCTTCACAATTGGACACCTC
AAATTGTACACAGAGACTTTAAGAGTTTAAATCTTTTGGTCAATGAAGATTGGGAATGCA
AAGTTTCAGATTTTGGTCTTAGTCGTTTTAATACCGCCGATAATTTAGAAACACTCAGTA
AGATTCGTGGTACCTTTGCCTATTGTTCACCTGAAGTCGCCGTAGGTAATGGTAGTCTCT
ACACTACCAAATCTGATATCTACAGTATTGGTATCGTCTTTTGGGAATTAGTAACTCGTG
TTATCAATGGTGAATACTCTCGTCCCTACAGTGAATATTCTCACATCAAAAT
Length of connected seq. 642
Full length Seq ID -
Full length Seq. -
Length of full length seq. -