>VHB648 (VHB648Q) /CSM/VH/VHB6-B/VHB648Q.Seq.d/
XXXXXXXXXXAAAGTATCAATTCCATATTGCTTCAGGTTTACCAGCTTCAACTACCGTTG
CCAAAGTTAGAAAAAATCCAAGTCAAGTTTCAACTCCTTCAAAACCAATTGCTAAACCAG
TCGCTAAACCAATGGTAGCTAAACCATCTGGTGGTTCTGTAATTATGAAGAAACCAGCAC
CAGCTGCTCCACCATCAGGTCCACCAGTCATGAAAAAACCAGCACCAACTGCTCCAGGTG
GCGCTCCAATGATGAAAAAACCAGCACCAGCTCCAGGTGGTGCTCCAATGATGAAAAAAC
CAGCACCAGTTCCAGGTGGTCCAGCTCCAGGTGGTTCTGCAATTATGAAACCAGCAGGCG
GGGTTTCTAAACCATTACCATCACCAACTGGTGCCCCAATGATGAAGAAACCAGCTCCAA
CCGCTCCAGGTGGTCCAGCTCCAGCAGGTGCACCAACTCCAATGATGAAAAAACCAGCAG
GTCAACCAATGATGAAACCAATCGCAAAACCACAACCAACTCCAATGAAGAAACCAGCAG
CTCCACCACCTCAACAATATATCGCTCTTTACGAGTACGACGCTATGCAACCAGATGAAT
TAACTTTCAAAGAAAATGATGTCATCAATTTAATTAAAAAAGTAGATGCTGATTGGTGGC
AAGGTGAATTAGTTAGAACTAAACAAATTGGTATGTTACCTTCAAATTATGTTCAACAAA
TTTAAAATCAAATAAAATT

---KYQFHIASGLPASTTVAKVRKNPSQVSTPSKPIAKPVAKPMVAKPSGGSVIMKKPAP
AAPPSGPPVMKKPAPTAPGGAPMMKKPAPAPGGAPMMKKPAPVPGGPAPGGSAIMKPAGG
VSKPLPSPTGAPMMKKPAPTAPGGPAPAGAPTPMMKKPAGQPMMKPIAKPQPTPMKKPAA
PPPQQYIALYEYDAMQPDELTFKENDVINLIKKVDADWWQGELVRTKQIGMLPSNYVQQI
*nqik

Frame A:
---KYQFHIASGLPASTTVAKVRKNPSQVSTPSKPIAKPVAKPMVAKPSGGSVIMKKPAP
AAPPSGPPVMKKPAPTAPGGAPMMKKPAPAPGGAPMMKKPAPVPGGPAPGGSAIMKPAGG
VSKPLPSPTGAPMMKKPAPTAPGGPAPAGAPTPMMKKPAGQPMMKPIAKPQPTPMKKPAA
PPPQQYIALYEYDAMQPDELTFKENDVINLIKKVDADWWQGELVRTKQIGMLPSNYVQQI
*nqik


Frame B:
---sinsillqvyqlqlplpklekiqvkfqllqnqllnqslnqw*lnhlvvl*l*rnqhq
llhhqvhqs*knqhqllqvalq**knqhqlqvvlq**knqhqfqvvqlqvvlql*nqqag
flnhyhhqlvpq**rnqlqplqvvqlqqvhqlq**knqqvnq**nqsqnhnqlq*rnqql
hhlnnislftsttlcnqmn*lskkmmssi*lkk*mliggkvn*lelnklvcylqimfnkf
kik*n


Frame C:
---vsipycfrftsfnyrcqs*kkskssfnsfktnc*tsr*tngs*tiwwfcnyeetsts
cstirstshektstncsrwrsndektstssrwcsndektstssrwsssrwfcnyetsrrg
f*tititnwcpndeetssnrsrwssssrctnsndektsrstndetnrktttnsneetsss
ttstiyrslrvrryatr*infqrk*chqfn*ksrc*lvar*is*n*tnwyvtfklcstnl
ksnki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB648 (VHB648Q) /CSM/VH/VHB6-B/VHB648Q.Seq.d/                       1445   0.0
SLH381 (SLH381Q) /CSM/SL/SLH3-D/SLH381Q.Seq.d/                       1429   0.0
VHB126 (VHB126Q) /CSM/VH/VHB1-B/VHB126Q.Seq.d/                       1407   0.0
AHF290 (AHF290Q) /CSM/AH/AHF2-D/AHF290Q.Seq.d/                       1403   0.0
VHN821 (VHN821Q) /CSM/VH/VHN8-A/VHN821Q.Seq.d/                       1392   0.0
VHA245 (VHA245Q) /CSM/VH/VHA2-B/VHA245Q.Seq.d/                       1354   0.0
VHO206 (VHO206Q) /CSM/VH/VHO2-A/VHO206Q.Seq.d/                       1292   0.0
SHG368 (SHG368Q) /CSM/SH/SHG3-C/SHG368Q.Seq.d/                       1249   0.0
VFI821 (VFI821Q) /CSM/VF/VFI8-A/VFI821Q.Seq.d/                       1237   0.0
VHC188 (VHC188Q) /CSM/VH/VHC1-D/VHC188Q.Seq.d/                        795   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L35323|L35323.1 Dictyostelium discoideum myosin IC (myoC) gene, complete cds.  1429   0.0    1
EK304803|EK304803.1 1095462377085 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005766661 5', genomic survey sequence.    32   0.002  4
BI742378|BI742378.1 kt50a08.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to contains element MER22 repetitive element ;, mRNA sequence.    40   0.005  2
BI324216|BI324216.1 kt55c08.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to contains MER22.b1 TAR1 repetitive element ;, mRNA sequence.    32   0.007  3
BM959303|BM959303.1 PLATE_13_C04_06.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence.    34   0.058  3
EJ162013|EJ162013.1 1092344051760 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001406284 3', genomic survey sequence.    34   0.061  3
EK122157|EK122157.1 1092963683871 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061002198558 5', genomic survey sequence.    28   0.064  3
BE603900|BE603900.1 GS104 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA clone GS104, sfi1=1 kb, T7, 7/2/99 900 900 676, mRNA sequence.    34   0.065  3
AC162681|AC162681.2 Bos taurus clone CH240-121F21, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   0.072  2
BM959500|BM959500.1 PLATE_13_G05_13.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence.    34   0.095  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P42522) RecName: Full=Myosin IC heavy chain;                         235   9e-61
L35323_1(L35323|pid:none) Dictyostelium discoideum myosin IC (my...   235   9e-61
AM989985_20(AM989985|pid:none) Zygosaccharomyces rouxii strain C...    64   6e-09
AE016820_134(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    63   8e-09
CR380949_144(CR380949|pid:none) Candida glabrata strain CBS138 c...    61   3e-08
(Q8I7C3) RecName: Full=LIM and SH3 domain protein Lasp;  &AE0142...    61   4e-08
AJ294538_1(AJ294538|pid:none) Drosophila melanogaster mRNA for L...    61   4e-08
AE014296_2946(AE014296|pid:none) Drosophila melanogaster chromos...    61   4e-08
AF132672_1(AF132672|pid:none) Rattus norvegicus EH-domain/SH3-do...    59   1e-07
AK160794_1(AK160794|pid:none) Mus musculus 14, 17 days embryo he...    59   1e-07

 psg: 0.87  gvh: 0.40  alm: 0.52  top: 0.63  tms: 0.00  mit: 0.16  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHB648 is cyt

>VHB648Z.Seq
NNNNNNNNNNAAAGTATCAATTCCATATTGCTTCAGGTTTACCAGCTTCAACTACCGTTG
CCAAAGTTAGAAAAAATCCAAGTCAAGTTTCAACTCCTTCAAAACCAATTGCTAAACCAG
TCGCTAAACCAATGGTAGCTAAACCATCTGGTGGTTCTGTAATTATGAAGAAACCAGCAC
CAGCTGCTCCACCATCAGGTCCACCAGTCATGAAAAAACCAGCACCAACTGCTCCAGGTG
GCGCTCCAATGATGAAAAAACCAGCACCAGCTCCAGGTGGTGCTCCAATGATGAAAAAAC
CAGCACCAGTTCCAGGTGGTCCAGCTCCAGGTGGTTCTGCAATTATGAAACCAGCAGGCG
GGGTTTCTAAACCATTACCATCACCAACTGGTGCCCCAATGATGAAGAAACCAGCTCCAA
CCGCTCCAGGTGGTCCAGCTCCAGCAGGTGCACCAACTCCAATGATGAAAAAACCAGCAG
GTCAACCAATGATGAAACCAATCGCAAAACCACAACCAACTCCAATGAAGAAACCAGCAG
CTCCACCACCTCAACAATATATCGCTCTTTACGAGTACGACGCTATGCAACCAGATGAAT
TAACTTTCAAAGAAAATGATGTCATCAATTTAATTAAAAAAGTAGATGCTGATTGGTGGC
AAGGTGAATTAGTTAGAACTAAACAAATTGGTATGTTACCTTCAAATTATGTTCAACAAA
TTTAAAATCAAATAAAATT