VHB626
Library VH
(Link to library)
Clone ID VHB626
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15592-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB626 (VHB626Q) /CSM/VH/VHB6-B/VHB626Q.Seq.d/
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAATAAAAAAAAAAATAATAATAANAATAAAAAAAAAAXXXXXXXX
XX
sequence update 2002.10.25
Translated Amino Acid sequence
SSSSSSSSSSSSSSSSSSSSSSSSSNKKKNNNXNKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
SSSSSSSSSSSSSSSSSSSSSSSSSNKKKNNNXNKKK---


Frame B:
vvvvvvvvvvvvvvvvvvvvvvvvvikkkiiixikk---


Frame C:
**************************kkk***x*kk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 69205820
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 122
Length of database: 74,089,688,502
Length adjustment: 22
Effective length of query: 100
Effective length of database: 72,567,160,462
Effective search space: 7256716046200
Effective search space used: 7256716046200
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

------=_Part_0_7804298.1175736423242--









Dictyostelium discoideum cDNA Project Home



dna update 2007. 4. 5
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,874,375
protein update 2009. 6.27
PSORT

psg: 0.80 gvh: 0.47 alm: 0.73 top: 0.53 tms: 0.00 mit: 0.62 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: mitochondrial
12.0 %: nuclear
8.0 %: cytoplasmic

>> prediction for VHB626 is mit

5' end seq. ID VHB626F
5' end seq.
>VHB626F.Seq
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAATAAAAAAAAAAATAATAATAANAATAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -