VHB604
Library VH
(Link to library)
Clone ID VHB604
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID VHB604P
(Link to Original site)
Representative DNA sequence
>VHB604 (VHB604Q) /CSM/VH/VHB6-A/VHB604Q.Seq.d/
AAAAAAAGTTTTTAAATTAAAAAATTTTGTTGAAAATAAAAATTTTAAATTTAATTCCCT
TTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAA
TAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAA
TCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCT
ATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTC
AAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAA
TCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGA
ATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAG
TTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAA
TAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTC
ATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATTATTC
ACCAAATATTACAAAGGTTGAAATTGAAAAAXXXXXXXXXXTGAAGTTATTAATCCACTT
ACAAACAAACCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTATGACAGT
GTTTTCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCTAT
TTATCACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTGAA
GATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTT
TATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGA
TATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCGAC
GATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGT
GATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCAAA
TTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTG
GCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGT
AAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAANATCACCA
GATTGGTAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence
KKVFKLKNFVENKNFKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIEN
HLVPKEIPVYRLNARESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQN
LFSIQNLKSTVVPNIVSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIIN
KVNDNKVNEYWGKCSELMYSLDKQVRELGIDGNGISTYYSPNITKVEIEK---

---EVINPLTNKPIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELF
GFTDPKKAEDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSG
IVTLDKTADDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEE
FLAIRDIVLAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSXSPDW*r


Translated Amino Acid sequence (All Frames)
Frame A:
kksf*ikkfc*k*kf*i*fpfdikq*q**fl*q*k***f**kilfnk*fnnvstiisnre
ssctkgdsslsfkcs*iiqsinrerttlcpsy*ccllvgfknlswsniy*kwsnl*slsk
sflnskfkinccskycf*rrif*fiiiccnflw*yg*llkfw***iysknfkrkitiny*
*s****sq*ilg*m**invfir*tskrigy*w*wyfnllftkyykg*n*k---

---*sy*stykqtn*pkd*si*iw*nl*qcfqiigftngrm*srmlwylfitr*kds*tl
wfhrskes*rcllcqlvdygtcwclcigil*stk*rctr*metssyasqilyfnniltfw
ychfrqdcrrcncqt**k*n*rywc*scw*fpq*inglqsncky*clnqiir*iyscq*r
iprh*rysfg*ketkkgicsssyisqfkw*slssrf**lnsrydrfxitrlvk

Frame B:
KKVFKLKNFVENKNFKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIEN
HLVPKEIPVYRLNARESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQN
LFSIQNLKSTVVPNIVSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIIN
KVNDNKVNEYWGKCSELMYSLDKQVRELGIDGNGISTYYSPNITKVEIEK---

---EVINPLTNKPIDPKTEVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELF
GFTDPKKAEDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSG
IVTLDKTADDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTHVNEE
FLAIRDIVLAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSXSPDW*r

Frame C:
kkfln*killkikilnlipf*y*titiiisitikiiivlikdfiqqii**cqyhhq**ri
ilyqrrfqfiv*mlvnhsiy*qrknnsmpiilvlpvggvqkfvlvkhllkvvqslisfki
fsqfki*nqllfqilflkkniliyyhmlqlfmviwvit*vlvivnlfqefqkknyn*lli
klmiiksmnigvnvvn*cih*ink*enwvlmvmvfqpiihqilqrlklk---

---kllihlqtnqltqrlkyinlvklmtvfsnhwvhqwknveqnvvvsiyhqmkrflnsl
vsqiqrklkmstmsig*lwhvlvsvhwnfivhqvkvhqvngdklickpdivf*qhsyvlv
lsl*trlptm*lsnlikvklevlvlkllvissid*wftkqlqilmpqsnysmnilmsmkn
ssplei*fwlkrnqerylfklihisiqmvkfvfkilmtqlkv*siqxhqigk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB604 (VHB604Q) /CSM/VH/VHB6-A/VHB604Q.Seq.d/ 2391 0.0
VHH553 (VHH553Q) /CSM/VH/VHH5-C/VHH553Q.Seq.d/ 1364 0.0
VHE342 (VHE342Q) /CSM/VH/VHE3-B/VHE342Q.Seq.d/ 1364 0.0
VHD228 (VHD228Q) /CSM/VH/VHD2-B/VHD228Q.Seq.d/ 1364 0.0
AFE202 (AFE202Q) /CSM/AF/AFE2-A/AFE202Q.Seq.d/ 1358 0.0
VHP723 (VHP723Q) /CSM/VH/VHP7-A/VHP723Q.Seq.d/ 1350 0.0
VHC421 (VHC421Q) /CSM/VH/VHC4-A/VHC421Q.Seq.d/ 1350 0.0
VHB140 (VHB140Q) /CSM/VH/VHB1-B/VHB140Q.Seq.d/ 1350 0.0
AFE248 (AFE248Q) /CSM/AF/AFE2-B/AFE248Q.Seq.d/ 1350 0.0
AHQ596 (AHQ596Q) /CSM/AH/AHQ5-D/AHQ596Q.Seq.d/ 1348 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 1314 0.0 1
CU407236|CU407236.1 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-418F10. 44 0.022 4
BZ401084|BZ401084.1 EINBU02TF EI_10_12_KB Entamoeba invadens genomic clone EINBU02, DNA sequence. 42 0.21 2
BZ387380|BZ387380.1 EINAB18TR EI_10_12_KB Entamoeba invadens genomic clone EINAB18, DNA sequence. 42 0.23 2
AC148816|AC148816.3 Medicago truncatula chromosome 7 clone mth2-16i24, complete sequence. 38 0.51 7
AC148816|AC148816.3 Medicago truncatula chromosome 7 clone mth2-16i24, complete sequence. 38 0.51 7
BQ475706|BQ475706.1 cicindela1d10.b.2 Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela1d10 5', mRNA sequence. 48 0.67 1
BQ475343|BQ475343.1 cicindela1d10.g Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela1d10 3', mRNA sequence. 48 0.67 1
BQ475124|BQ475124.1 cicindela1c10.b Cicindela campestris cDNA Cicindela campestris cDNA clone cicindela1c10 5', mRNA sequence. 48 0.67 1
AC161736|AC161736.2 Loxodonta africana clone VMRC15-87H10, WORKING DRAFT SEQUENCE, 5 ordered pieces. 48 0.67 1
dna update 2007. 4. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3; EC=3.4.1... 179 3e-43
X91067_8(X91067|pid:none) S.cerevisiae DNA from chromosome XV (c... 177 1e-42
(Q08225) RecName: Full=Probable dipeptidyl-peptidase 3; ... 177 1e-42
BC043905_1(BC043905|pid:none) Xenopus laevis dipeptidylpeptidase... 170 1e-40
BC077244_1(BC077244|pid:none) Xenopus laevis dipeptidylpeptidase... 170 1e-40
CT005244_97(CT005244|pid:none) Leishmania major strain Friedlin,... 167 8e-40
AM502223_97(AM502223|pid:none) Leishmania infantum chromosome 5. 167 1e-39
AK150126_1(AK150126|pid:none) Mus musculus bone marrow macrophag... 166 1e-39
AK031020_1(AK031020|pid:none) Mus musculus adult male thymus cDN... 166 1e-39
BC066817_1(BC066817|pid:none) Mus musculus dipeptidylpeptidase 3... 166 1e-39
protein update 2009. 6.27
PSORT

psg: 0.51 gvh: 0.27 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.07
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall

>> prediction for VHB604 is nuc

5' end seq. ID VHB604F
5' end seq.
>VHB604F.Seq
AAAAAAAGTTTTTAAATTAAAAAATTTTGTTGAAAATAAAAATTTTAAATTTAATTCCCT
TTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAA
TAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAA
TCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCT
ATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTC
AAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAA
TCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGA
ATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAG
TTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAA
TAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTC
ATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATTATTC
ACCAAATATTACAAAGGTTGAAATTGAAAAANNNNNNNNNN
Length of 5' end seq. 701
3' end seq. ID VHB604Z
3' end seq.
>VHB604Z.Seq
NNNNNNNNNNTGAAGTTATTAATCCACTTACAAACAAACCAATTGACCCAAAGACTGAAG
TATATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGGTTCACCAATGGAAG
AATGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAAGATTCTTGAACTCT
TTGGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATGG
CACGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTA
AATGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCTG
GTATTGTCACTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAA
TTAGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAG
CAACTGCAAATATTGATGCCTCAATCAAATTATTCGATGAATATACTCATGTCAATGAAG
AATTCCTCGCCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTC
AAGCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAA
CTCAAGGTATGATCGATTCAANATCACCAGATTGGTAAAGA
Length of 3' end seq. 701
Connected seq. ID VHB604P
Connected seq.
>VHB604P.Seq
AAAAAAAGTTTTTAAATTAAAAAATTTTGTTGAAAATAAAAATTTTAAATTTAATTCCCT
TTTGATATTAAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAA
TAAAAGATTTTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAA
TCATCTTGTACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCT
ATTAACAGAGAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTC
AAAAATTTGTCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAA
TCTTTTCTCAATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGA
ATATTCTGATTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAG
TTTTGGTGATAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAA
TAAAGTTAATGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTC
ATTAGATAAACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATTATTC
ACCAAATATTACAAAGGTTGAAATTGAAAAA----------TGAAGTTATTAATCCACTT
ACAAACAAACCAATTGACCCAAAGACTGAAGTATATAAATTTGGTGAAACTTATGACAGT
GTTTTCAAATCATTGGGTTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCTAT
TTATCACCAGATGAAAAGATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTGAA
GATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTT
TATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGA
TATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCGAC
GATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGT
GATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCAAA
TTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTG
GCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGT
AAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTATGATCGATTCAANATCACCA
GATTGGTAAAGA
Length of connected seq. 1382
Full length Seq ID -
Full length Seq. -
Length of full length seq. -