VHB594 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB594
Library	VH (Link to library)
Clone ID	VHB594 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16172-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB5-D/VHB594Q.Seq.d/
Representative seq. ID	VHB594E (Link to Original site)
Representative DNA sequence	>VHB594 (VHB594Q) /CSM/VH/VHB5-D/VHB594Q.Seq.d/ AAATTGAAAAATTAAAATTTCATACAAATTATCTTTTTAAATAATAAAATTTATAAAATG TCTACCCAAGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACC AATTACAATGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACC AATACTATTGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATACCAACCAATACATT GTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGAT CATGATCAATGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCT GAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCAT TTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAAC CACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTT GGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAA GTCGTTGTCCCAGTTAAATTCCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAAC TTTGATCAAATCGATTGTACTGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGA AACATTACCACCAAAGGTTTCGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTAT TCATTAAGAGCTGATTACATTGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAA ATGTAATTAATTTTTA
sequence update	2002.10.27
Translated Amino Acid sequence	klknNFIQIIFLNNKIYKMSTQGLVQLISNAQCHLRTSTNYNDVHTQFNAVLNYKNKGT NTIDGSEAWCSSIVDTNQYIVAGCEVPRTFMCVALQGRGDHDQWVTSYKIRYSLDNVTWS EYRNGAAITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQV GADIYTGDNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPR NITTKGFDCVFYTWNANKVYSLRADYIATALEifnliikm*lif
Translated Amino Acid sequence (All Frames)	Frame A: klknNFIQIIFLNNKIYKMSTQGLVQLISNAQCHLRTSTNYNDVHTQFNAVLNYKNKGT NTIDGSEAWCSSIVDTNQYIVAGCEVPRTFMCVALQGRGDHDQWVTSYKIRYSLDNVTWS EYRNGAAITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQV GADIYTGDNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPR NITTKGFDCVFYTWNANKVYSLRADYIATALEifnliikmlif Frame B: nkikisyklsfiikfikclpkvfnlsqmlnviepqpitmmstlnlmlftiktkvp illmvqklgvhqsiptntlllvvkfhvllcvllskvvviminglhhtksvihimlpgl nivmvllllvlivtllliislilqlelvqllsthpgittfhdvnstlnqykaqslkl vqiftlaitvpipvqvnvkslsqlnsnlnlllsqrlpstliksivlmlpiklvlvfnqe tlppkvsivfstlgmltksihelitllllnkflilllkcnfl Frame C: ieklkfhtnylfknlnvyprfsstylkcsmsfknlnqlqcphsiccfklkqryq yywfrslvfinrryqpihccwlsstyfyvccsprswssmgyiiqnplfircylv* iswccyywcnshccsflysnssfncyppinlephfikmilhststklshssw crylhwrlclkyrfrtsrcpsipiicyspkgcpqlsnrlycyqsnsywcstkk hyhqrfrlcflhlecqslfikslhcycfrinfsyy*nvinf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB594 (VHB594Q) /CSM/VH/VHB5-D/VHB594Q.Seq.d/ 1580 0.0 VHP309 (VHP309Q) /CSM/VH/VHP3-A/VHP309Q.Seq.d/ 1544 0.0 VHG652 (VHG652Q) /CSM/VH/VHG6-C/VHG652Q.Seq.d/ 1524 0.0 VSF358 (VSF358Q) /CSM/VS/VSF3-C/VSF358Q.Seq.d/ 1516 0.0 FC-BF07 (FC-BF07Q) /CSM/FC/FC-BF/FC-BF07Q.Seq.d/ 1237 0.0 VFB223 (VFB223Q) /CSM/VF/VFB2-A/VFB223Q.Seq.d/ 1185 0.0 FC-BH10 (FC-BH10Q) /CSM/FC/FC-BH/FC-BH10Q.Seq.d/ 1110 0.0 VFI141 (VFI141Q) /CSM/VF/VFI1-B/VFI141Q.Seq.d/ 1096 0.0 VHF183 (VHF183Q) /CSM/VH/VHF1-D/VHF183Q.Seq.d/ 1088 0.0 VHM433 (VHM433Q) /CSM/VH/VHM4-B/VHM433Q.Seq.d/ 1017 0.0
own update	2003. 1.12
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N J01284\|J01284.1 Slime mold (D.discoideum) discoidin-Ic gene, complete cds. 1544 0.0 1 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1544 0.0 1 J01282\|J01282.1 Slime mold (D.discoideum) discoidin-ia gene. 1235 0.0 1 J01283\|J01283.1 Slime mold (D.discoideum) discoidin-Ib gene, partial cds. 882 0.0 1 J01285\|J01285.1 Slime mold (D.discoideum) discoidin-Id gene, 5' end. 819 0.0 1 J01281\|J01281.1 Slime mold (D.discoideum) discoidin-i(5.6) gene, 3' end; (3' part of discoidin-ib or discoidin-id, not known which). 561 e-155 1 X00327\|X00327.1 Dictyostelim discoideum discoidin I pseudogene fragment with 139 bp of discoidin I homology. 194 3e-45 1 AB120175\|AB120175.1 Dictyostelium discoideum DD7-1 mRNA for hypothetical protein, complete cds. 78 6e-36 7 D29628\|D29628.1 Dictyostelium discoideum mRNA for discoidin II, complete cds. 68 4e-07 1 X00326\|X00326.1 Dictyostelium dicoideum discoidin I beta gene upstream region. 64 7e-06 1
dna update	2007. 4. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P02887) RecName: Full=Discoidin-1 subunit B/C; AltName: Full=Di... 527 e-148 J01282_1(J01282\|pid:none) Slime mold (D.discoideum) discoidin-ia... 500 e-140 DLDOID(A03383) discoidin I chain D - slime mold (Dictyostelium d... 307 3e-82 AB120175_1(AB120175\|pid:none) Dictyostelium discoideum DD7-1 mRN... 300 3e-80 (P42530) RecName: Full=Discoidin-2; AltName: Full=Discoidin II; ... 237 3e-61 J01281_1(J01281\|pid:none) Slime mold (D.discoideum) discoidin-i(... 211 2e-53 AJ578435_1(AJ578435\|pid:none) Paracentrotus lividus partial mRNA... 79 3e-13 AF070482_1(AF070482\|pid:none) Lytechinus variegatus echinonectin... 77 6e-13 EU304328_129(EU304328\|pid:none) Ostreococcus virus OsV5, complet... 75 2e-12 FN357340_20(FN357340\|pid:none) Schistosoma mansoni genome sequen... 73 1e-11
protein update	2009. 7.11
PSORT	psg: 0.71 gvh: 0.48 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.06 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: nuclear 32.0 %: cytoplasmic 24.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHB594 is nuc
5' end seq. ID	VHB594F
5' end seq.	>VHB594F.Seq AAATTGAAAAATTAAAATTTCATACAAATTATCTTTTTAAATAATAAAATTTATAAAATG TCTACCCAAGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACC AATTACAATGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACC AATACTATTGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATACCAACCAATACATT GTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGAT CATGATCAATGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCT GAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCAT TTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAAC CACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTT GGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAATNNNNNNNNNN
Length of 5' end seq.	589
3' end seq. ID	VHB594Z
3' end seq.	>VHB594Z.Seq NNNNNNNNNNATGTCTACCCAAGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTT AAGAACNTCAACCAATTACAATGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAA AAACAAAGGTACCAATACTATTGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATAC CAACCAATACATTGTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCA AGGTCGTGGTGATCATGATCAATGGGTTACATCATACAAAATCCGTTATTCATTAGATAA TGTTACCTGGTCTGAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACAC TGTTGTTAATCATTTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATT AACCTGGAATAACCACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTC AGTCACTCAAGTTGGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAATACCGGTTC AGGTAAACGTGAAGTCGTTGTCCCAGTTAAATTCCAATTTGAATTTGCTACTCTCCCAAA GGTTGCCCTCAACTTTGATCAAATCGATTGTACTGATGCTACCAATCAAACTCGTATTGG TGTTCAACCAAGAAACATTACCACCAAAGGTTTCGATTGTGTTTTCTACACTTGGAATGC TAACAAAGTCTATTCATTAAGAGCTGATTACATTGCTACTGCTTTAGAATAAATTTTTAA TCTTATTATTAAAATGTAATTAATTTTTA
Length of 3' end seq.	809
Connected seq. ID	VHB594P
Connected seq.	>VHB594P.Seq AAATTGAAAAATTAAAATTTCATACAAATTATCTTTTTAAATAATAAAATTTATAAAATG TCTACCCAAGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACC AATTACAATGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACC AATACTATTGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATACCAACCAATACATT GTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGAT CATGATCAATGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCT GAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCAT TTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAAC CACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTT GGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAAT----------ATGTCTACCCA AGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTTAAGAACNTCAACCAATTACAA TGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTAT TGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATACCAACCAATACATTGTTGCTGG TTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCA ATGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCG TAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGA TACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTC ATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGA TATTTACACTGGCGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTCGTTGT CCCAGTTAAATTCCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCA AATCGATTGTACTGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTAC CACCAAAGGTTTCGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAG AGCTGATTACATTGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAAATGTAATT AATTTTTA
Length of connected seq.	1378
Full length Seq ID	VHB594E
Full length Seq.	>VHB594E.Seq AAATTGAAAAATTAAAATTTCATACAAATTATCTTTTTAAATAATAAAATTTATAAAATG TCTACCCAAGGTTTAGTTCAACTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACC AATTACAATGATGTCCACACTCAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACC AATACTATTGATGGTTCAGAAGCTTGGTGTTCATCAATCGTAGATACCAACCAATACATT GTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGAT CATGATCAATGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCT GAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCAT TTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAAC CACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTT GGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAA GTCGTTGTCCCAGTTAAATTCCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAAC TTTGATCAAATCGATTGTACTGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGA AACATTACCACCAAAGGTTTCGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTAT TCATTAAGAGCTGATTACATTGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAA ATGTAATTAATTTTTA
Length of full length seq.	856

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas