VHB576
Library VH
(Link to library)
Clone ID VHB576
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHB576P
(Link to Original site)
Representative DNA sequence
>VHB576 (VHB576Q) /CSM/VH/VHB5-D/VHB576Q.Seq.d/
AAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCT
GGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAA
TCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGT
ACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCA
GAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCNAA
GGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCA
GTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAA
GCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAA
GXXXXXXXXXXCGCTGATAACCNCGAATGGGATAATAATGATGCCATGAACATTTGGTCT
TTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATAT
TTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTT
GTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACT
GATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGNT
GNTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATNTACTTAGTAGAAATTACTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATT
GGTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTTACCAGTATTA
GAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTT
sequence update 2002.10.25
Translated Amino Acid sequence
KTTLSDSLIQRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGC
TSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVXGVCVQTETVLRQAVAERIKP
VLFVNKVDRFLLELQLNTEEAYLSFRRAIESVNVIVGNTE---

---ADNXEWDNNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVV
CDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYXXELTASPTLLEPXYLVEITAP
ENAIGGIYSVLNRRRGIVIGEERRIGSPLXSVKAHLPVLESFGFTADLRSHTAGQA


Translated Amino Acid sequence (All Frames)
Frame A:
KTTLSDSLIQRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGC
TSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVXGVCVQTETVLRQAVAERIKP
VLFVNKVDRFLLELQLNTEEAYLSFRRAIESVNVIVGNTE---

---r**prmg***chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrcc
l**kherypfqsl*chpph*chpqrwwsnhpncssctlxx*inclpnslrtnxlsrnycp
rkrywwyllctqss*rycyw*rtsyrfpiixcqssftsirilrfhr*ftfphcrssf

Frame B:
kplyqil*skelvllpikflvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvv
lhtnf*silsipqvtlisvqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnq
sysstksivsy*nsn*tlkklislsvellnpsmsllvtlk---

---ADNXEWDNNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVV
CDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYXXELTASPTLLEPXYLVEITAP
ENAIGGIYSVLNRRRGIVIGEERRIGSPLXSVKAHLPVLESFGFTADLRSHTAGQA

Frame C:
nhfirffnpkswyycr*sfw*yeiyvmsc**trawyhh*ificitslrnakgrqitswly
ftrifnqsyrfprsr*fqfrsnccppcy*wcfsryrlrxrclrtnrncitssrr*tyqts
lirqqsrsflirtpikh*rslslfp*sy*irqchcw*h*---

---litxngiimmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlf
vmkt*evsvsifmmspstlmpstevvvkssqllvvysmxxn*lppqls*nqxt**kllpq
ktllvvftlysivvevlllvknvvsvphyxlskliyqy*npsvspliyvptlpvkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB576 (VHB576Q) /CSM/VH/VHB5-D/VHB576Q.Seq.d/ 1913 0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 997 0.0
VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/ 997 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 997 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 997 0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 997 0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 997 0.0
VHQ436 (VHQ436Q) /CSM/VH/VHQ4-B/VHQ436Q.Seq.d/ 997 0.0
VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 997 0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 997 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 957 0.0 2
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 72 7e-57 10
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 3e-56 8
Y09664|Y09664.1 C.albicans EFT2 gene. 78 2e-54 8
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 70 1e-51 9
AY497659|AY497659.1 Candida dubliniensis strain CBS 7987 translation elongation factor gene, partial cds. 78 2e-43 5
AR550596|AR550596.1 Sequence 5727 from patent US 6747137. 78 2e-39 5
AF107290|AF107290.1 Candida lusitaniae elongation factor 2 (EFT2) gene, partial cds. 64 1e-38 7
AY497649|AY497649.1 Candida albicans strain CBS 562 translation elongation factor gene, partial cds. 78 3e-37 4
AY497639|AY497639.1 Candida albicans strain CBS 1905 translation elongation factor gene, partial cds. 78 4e-37 4
dna update 2007. 4. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 301 2e-80
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ... 228 3e-58
DQ206513_1(DQ206513|pid:none) Priapulus caudatus isolate TOA66 e... 227 6e-58
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 226 1e-57
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 225 2e-57
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 225 2e-57
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 225 2e-57
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 224 4e-57
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 224 4e-57
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 224 5e-57
protein update 2009. 6.27
PSORT

psg: 0.70 gvh: 0.38 alm: 0.31 top: 0.60 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VHB576 is nuc

5' end seq. ID VHB576F
5' end seq.
>VHB576F.Seq
AAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCT
GGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAA
TCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGT
ACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCA
GAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCNAA
GGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCA
GTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAA
GCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAA
GNNNNNNNNNN
Length of 5' end seq. 491
3' end seq. ID VHB576Z
3' end seq.
>VHB576Z.Seq
NNNNNNNNNNCGCTGATAACCNCGAATGGGATAATAATGATGCCATGAACATTTGGTCTT
TCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATT
TGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTG
TTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTG
ATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGNTG
NTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATNTACTTAGTAGAAATTACTGCCC
CAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTG
GTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTTACCAGTATTAG
AATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTT
Length of 3' end seq. 532
Connected seq. ID VHB576P
Connected seq.
>VHB576P.Seq
AAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCT
GGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAA
TCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGT
ACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCA
GAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCNAA
GGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCA
GTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAA
GCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAA
G----------CGCTGATAACCNCGAATGGGATAATAATGATGCCATGAACATTTGGTCT
TTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATAT
TTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTT
GTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACT
GATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGNT
GNTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATNTACTTAGTAGAAATTACTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATT
GGTGAAGAACGTCGTATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTTACCAGTATTA
GAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTT
Length of connected seq. 1003
Full length Seq ID -
Full length Seq. -
Length of full length seq. -