VHB563
Library VH
(Link to library)
Clone ID VHB563
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16586-1
Original site URL
Representative seq. ID VHB563P
(Link to Original site)
Representative DNA sequence
>VHB563 (VHB563Q) /CSM/VH/VHB5-C/VHB563Q.Seq.d/
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCAAATTAAAAAATAAT
TTAATAATAANAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAAXXXXXXXXXXCATACTGGTGATGTCGGTCATATCGATAAG
GATGGTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAA
AATATTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCC
GTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTA
TTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCT
TCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAA
CTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACT
GGTGAAACTTCTGAATTAACTCCATC
sequence update 2002.10.25
Translated Amino Acid sequence
istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiiif*k*knkkikxn*kii
***xffxykedxqikkikx*IXFKKK---

---HTGDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQ
KYLVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTI
KKVKILPVEFQETGETSELTP


Translated Amino Acid sequence (All Frames)
Frame A:
nlyhtfqsfihplskththtyiykinlllfichkkkknxnnnnnflkikk*knkxklknn
liixifxl*rrqxnkknkixnkx*kk---

---HTGDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQ
KYLVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTI
KKVKILPVEFQETGETSELTP

Frame B:
istipfnrlfipyqkhththiyikliyyflfvikkkkixiiiiif*k*knkkikxn*kii
***xffxykedxqikkikx*IXFKKK---

---ilvmsvisirmvsfsspierks*slqqvvkifhqp*lkvsfvkslvlnkp**lvivk
ni*llwslsmliyssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqql
kklkfyqlnskklvklln*lh

Frame C:
slpylsivyssliknththiyi*n*fitfyls*kkkkxq****ffknkkikk*xqikk*f
nnxnfsfikktxk*kk*nxk*xlkkk---

---yw*crsyr*gwfhfhhr*kervnhysrw*kyftnld*rfhssnhwc*tsrsnw*ssk
ifscfghcqc*fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*
ks*nfts*iprnw*nf*insi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB563 (VHB563Q) /CSM/VH/VHB5-C/VHB563Q.Seq.d/ 825 0.0
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/ 821 0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/ 821 0.0
AHD785 (AHD785Q) /CSM/AH/AHD7-D/AHD785Q.Seq.d/ 821 0.0
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/ 815 0.0
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/ 813 0.0
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/ 813 0.0
AHF157 (AHF157Q) /CSM/AH/AHF1-C/AHF157Q.Seq.d/ 813 0.0
CHF547 (CHF547Q) /CSM/CH/CHF5-B/CHF547Q.Seq.d/ 803 0.0
SHJ871 (SHJ871Q) /CSM/SH/SHJ8-C/SHJ871Q.Seq.d/ 799 0.0

own update 2002.12.22
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AM458057|AM458057.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X226249.7, clone ENTAV 115. 56 0.001 1
BX548045|BX548045.6 Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17. 46 0.003 2
BX927226|BX927226.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-6J23. 46 0.003 2
DV182098|DV182098.1 EST-161-5 Young leaves inoculated with powdery mildew pathogen (Uncinula necator) cDNA library of Chinese wild grape Vitis pseudoreticulata cDNA 5', mRNA sequence. 52 0.021 1
EJ970719|EJ970719.1 1093022079894 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002920862 5', genomic survey sequence. 52 0.021 1
EJ277446|EJ277446.1 1095366029905 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005468816 5', genomic survey sequence. 52 0.021 1
CT518011|CT518011.1 A BAC library has been constructed from cultivar Cabernet Sauvignon using two different restriction enzymes : HindIII (clone prefix : VCS1H) and EcoRI (clone prefix : VCS1E). 50 0.082 1
CT497858|CT497858.1 A BAC library has been constructed from cultivar Cabernet Sauvignon using two different restriction enzymes : HindIII (clone prefix : VCS1H) and EcoRI (clone prefix : VCS1E). 50 0.082 1
AM488596|AM488596.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X275768.5, clone ENTAV 115. 50 0.082 1
AM464424|AM464424.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X163662.5, clone ENTAV 115. 50 0.082 1
dna update 2007. 4. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP011115_849(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 108 1e-22
AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1... 106 7e-22
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 106 7e-22
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ... 106 7e-22
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 105 1e-21
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC... 105 2e-21
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268. 105 2e-21
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import... 105 2e-21
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 102 1e-20
AP008957_3586(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 101 2e-20
protein update 2009. 6.27
PSORT

psg: 0.52 gvh: 0.47 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VHB563 is nuc

5' end seq. ID VHB563F
5' end seq.
>VHB563F.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCAAATTAAAAAATAAT
TTAATAATAANAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 270
3' end seq. ID VHB563Z
3' end seq.
>VHB563Z.Seq
NNNNNNNNNNCATACTGGTGATGTCGGTCATATCGATAAGGATGGTTTCATTTTCATCAC
CGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGAT
TGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCA
AAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCA
AGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCAT
TGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAAT
TAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTGAATTAAC
TCCATC
Length of 3' end seq. 426
Connected seq. ID VHB563P
Connected seq.
>VHB563P.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAAATANCAAT
AATAATAATAATTTTTTAAAAATAAAAAAATAAAAAAATAAAANCAAATTAAAAAATAAT
TTAATAATAANAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATANTA
AATAAANTTTAAAAAAAAAA----------CATACTGGTGATGTCGGTCATATCGATAAG
GATGGTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAA
AATATTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCC
GTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTA
TTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCT
TCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAA
CTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACT
GGTGAAACTTCTGAATTAACTCCATC
Length of connected seq. 676
Full length Seq ID -
Full length Seq. -
Length of full length seq. -