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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB561
Library VH
(Link to library)
Clone ID VHB561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15036-1
Original site URL
Representative seq. ID VHB561P
(Link to Original site)
Representative DNA sequence 
>VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/
TAGTTTACCAAATGTACCATCAATAACTACAACACCAACTCTTCACCATCATCATCATCA
TCATCAACAACAACAAAGTGGTGTTGGTAATAATAATAATGTTAATTCAGGATTTCAAGT
TCAATTAAATCAACCATTAGTTGGAATTATTATGGGTAGTCAATCAGATTGGGAAACTAT
GAAATTAGCAGCAAATACATTAACAACATTAGGTGTACCATTTGAAACTAGAATTGTATC
AGCACATAGAACACCTGATAGATTATTTGAATATGCAAAAACAGCAAAGAGTAGAGGATT
AAAAATTGTGATTGCAGGTGCTTGGTGGTGCTGCTCATTTACCTGGCATGGTTGCTGCAT
TAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAGAGCATTGAGTGGTGTTGATA
GTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGTTGGTACTGTTGCAATTGGTG
CTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGTTTTGGCTCCTTATTACCCTT
CAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAACTGATGCAGTTGCTGAAATAC
CTGTTGATAATCCAACATCAACATCAACTACTACTACTACTACAACTACATXXXXXXXXX
XGAAAAGATTGGTTATCCAGCAATTNTTAAATCAAATACTATGGGTTATGATGGTAAAGG
TCAAGTTAAATTAACCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGTTACCTNTGA
AACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAAGCATCAGT
TATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACA
TCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAA
ACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGC
CGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGA
ATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCA
ATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAA
ACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCT
TTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCA
TATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATA
AAAAAAAAATTAAAAAAAATAAAAATAAAATTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vyqmyhq*lqhqlftiiiiiinnnkvvlviiimliqdfkfn*inh*lellwvvnqigkl*
n*qqih*qh*vyhlklelyqhiehlidylnmqkqqrved*kl*LQVLGGAAHLPGMVAAL
TPLPVFGVPVQSRALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPS
IELSLDLYRKKQTDAVAEIPVDNPTSTSTTTTTTTT---

---EKIGYPAIXKSNTMGYDGKGQVKLTDQVDXEQAWKKVTXETCATKAILEQYIEFESE
ASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVG
IIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVD
FTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVT
QQ*kkn*kk*k*nlk
Translated Amino Acid sequence (All Frames) 
Frame A:
*ftkctinnyntnsspsssssstttkwcw****c*frisssikstiswnyyg*sirlgny
eisskyinnircti*n*ncist*nt**ii*icknske*rikncdcrclvvlliylawllh
*lhclylvyqcnpeh*vvlivyyqsfkcllvfllvllqlvllvlqmllyylllfwllitl
qss*v*iyiernklmqllkylliiqhqhqlllllqlh---

---EKIGYPAIXKSNTMGYDGKGQVKLTDQVDXEQAWKKVTXETCATKAILEQYIEFESE
ASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVG
IIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVD
FTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDAKEGRKMGHVT
QQ*kkn*kk*k*nlk

Frame B:
slpnvpsitttptlhhhhhhhqqqqsgvgnnnnvnsgfqvqlnqplvgiimgsqsdwetm
klaantlttlgvpfetrivsahrtpdrlfeyaktaksrglkiviagawwccsftwhgcci
nsiaciwctsaiqsiewc**fiinrsnacwyscwyccnwccwcykccfiicccfgsllpf
nrvkfrfi*ketn*csc*ntc**snininyyyyyny---

---krlviqqxlnqilwvmmvkvkln*piksxlnklgkrlpxklvqpkqylnni*slnqk
hqll*hvl*meqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*rllvpmvwlv
llpsnyl**ktmkqvntl*w*mnwhqdhtivvigpskvv*plnlnn*fvvfvvclwvqsi
slnv*vklnlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkvmqkkvvkwvmll
nnkkkikknknki*

Frame C:
vyqmyhq*lqhqlftiiiiiinnnkvvlviiimliqdfkfn*inh*lellwvvnqigkl*
n*qqih*qh*vyhlklelyqhiehlidylnmqkqqrved*kl*LQVLGGAAHLPGMVAAL
TPLPVFGVPVQSRALSGVDSLLSIVQMPAGIPVGTVAIGAAGATNAALLSAAVLAPYYPS
IELSLDLYRKKQTDAVAEIPVDNPTSTSTTTTTTTT---

---kdwlssnx*ikyygl*w*rss*inrssrx*tslekgyl*nlcnqsnt*tiyrv*irs
isycstcfrwnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwfkdcsfqwfgwy
ycrriicsekq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafgfsrf
h*tyk*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*r*ckrrs*ngscys
tikkklkkikikfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1405   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1382   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1382   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1356   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1348   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1298   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1261   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1257   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1174   0.0
CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1108   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EJ919189|EJ919189.1 1093018591814 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002821352 5', genomic survey sequence.    82   9e-21  3
EJ918510|EJ918510.1 1093018588550 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002821352 3', genomic survey sequence.    80   4e-20  3
EJ540893|EJ540893.1 1092955372412 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061001935252 3', genomic survey sequence.    62   8e-17  4
EJ577055|EJ577055.1 1092960116303 Global-Ocean-Sampling_GS-29-01-01-1P0-1P3KB marine metagenome genomic clone 1061001935252 5', genomic survey sequence.    62   8e-17  4
EJ656923|EJ656923.1 1092955009731 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001826916 5', genomic survey sequence.    62   8e-14  2
EJ469387|EJ469387.1 1095403400222 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061005574158 3', genomic survey sequence.    62   1e-12  3
EJ083634|EJ083634.1 1095460072323 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005741407 3', genomic survey sequence.    46   2e-12  5
EJ010954|EJ010954.1 1095403706346 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB environmental sequence genomic clone 1061005668537 5', genomic survey sequence.    60   3e-12  3
CP000439|CP000439.1 Francisella tularensis subsp. novicida U112, complete genome.    54   4e-12  2
CP000608|CP000608.1 Francisella tularensis subsp. tularensis WY96-3418, complete genome.    54   4e-12  2
dna update 2007. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   201   4e-50
CP000699_3106(CP000699|pid:none) Sphingomonas wittichii RW1, com...   193   1e-47
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   192   2e-47
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   190   9e-47
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   190   9e-47
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   190   1e-46
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   187   6e-46
BX572606_164(BX572606|pid:none) Rhodopseudomonas palustris CGA00...   186   2e-45
CP000463_4055(CP000463|pid:none) Rhodopseudomonas palustris BisA...   184   5e-45
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   183   1e-44
protein update 2009. 6.27
PSORT 

 psg: 0.92  gvh: 0.63  alm: 0.35  top: 0.50  tms: 0.00  mit: 0.22  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHB561 is cyt
5' end seq. ID VHB561F
5' end seq. 
>VHB561F.Seq
TAGTTTACCAAATGTACCATCAATAACTACAACACCAACTCTTCACCATCATCATCATCA
TCATCAACAACAACAAAGTGGTGTTGGTAATAATAATAATGTTAATTCAGGATTTCAAGT
TCAATTAAATCAACCATTAGTTGGAATTATTATGGGTAGTCAATCAGATTGGGAAACTAT
GAAATTAGCAGCAAATACATTAACAACATTAGGTGTACCATTTGAAACTAGAATTGTATC
AGCACATAGAACACCTGATAGATTATTTGAATATGCAAAAACAGCAAAGAGTAGAGGATT
AAAAATTGTGATTGCAGGTGCTTGGTGGTGCTGCTCATTTACCTGGCATGGTTGCTGCAT
TAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAGAGCATTGAGTGGTGTTGATA
GTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGTTGGTACTGTTGCAATTGGTG
CTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGTTTTGGCTCCTTATTACCCTT
CAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAACTGATGCAGTTGCTGAAATAC
CTGTTGATAATCCAACATCAACATCAACTACTACTACTACTACAACTACATNNNNNNNNN
N
Length of 5' end seq. 661
3' end seq. ID VHB561Z
3' end seq. 
>VHB561Z.Seq
NNNNNNNNNNGAAAAGATTGGTTATCCAGCAATTNTTAAATCAAATACTATGGGTTATGA
TGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGT
TACCTNTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGA
AGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTAC
CAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATA
TATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGG
TATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAAT
GGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGT
AACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGA
TTTCACTAAACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAAT
GACAAATCTTTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTC
ACATCTTCATATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTAC
TCAACAATAAAAAAAAAATTAAAAAAAATAAAAATAAAATTTAAAA
Length of 3' end seq. 766
Connected seq. ID VHB561P
Connected seq. 
>VHB561P.Seq
TAGTTTACCAAATGTACCATCAATAACTACAACACCAACTCTTCACCATCATCATCATCA
TCATCAACAACAACAAAGTGGTGTTGGTAATAATAATAATGTTAATTCAGGATTTCAAGT
TCAATTAAATCAACCATTAGTTGGAATTATTATGGGTAGTCAATCAGATTGGGAAACTAT
GAAATTAGCAGCAAATACATTAACAACATTAGGTGTACCATTTGAAACTAGAATTGTATC
AGCACATAGAACACCTGATAGATTATTTGAATATGCAAAAACAGCAAAGAGTAGAGGATT
AAAAATTGTGATTGCAGGTGCTTGGTGGTGCTGCTCATTTACCTGGCATGGTTGCTGCAT
TAACTCCATTGCCTGTATTTGGTGTACCAGTGCAATCCAGAGCATTGAGTGGTGTTGATA
GTTTATTATCAATCGTTCAAATGCCTGCTGGTATTCCTGTTGGTACTGTTGCAATTGGTG
CTGCTGGTGCTACAAATGCTGCTTTATTATCTGCTGCTGTTTTGGCTCCTTATTACCCTT
CAATCGAGTTAAGTTTAGATTTATATAGAAAGAAACAAACTGATGCAGTTGCTGAAATAC
CTGTTGATAATCCAACATCAACATCAACTACTACTACTACTACAACTACAT---------
-GAAAAGATTGGTTATCCAGCAATTNTTAAATCAAATACTATGGGTTATGATGGTAAAGG
TCAAGTTAAATTAACCGATCAAGTCGATNTTGAACAAGCTTGGAAAAAGGTTACCTNTGA
AACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCAGAAGCATCAGT
TATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTTACCAATAAACA
TCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAA
ACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGC
CGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGA
ATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTCTCA
ATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAA
ACGTATAAGTGAAGCTGAATTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCT
TTTAGGTCAAGAAGTTAACGGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCA
TATCTATGCTAAAGGTGATGCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATA
AAAAAAAAATTAAAAAAAATAAAAATAAAATTTAAAA
Length of connected seq. 1407
Full length Seq ID -
Full length Seq. -
Length of full length seq. -