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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB556
Library VH
(Link to library)
Clone ID VHB556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID VHB556P
(Link to Original site)
Representative DNA sequence 
>VHB556 (VHB556Q) /CSM/VH/VHB5-C/VHB556Q.Seq.d/
TAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGTTG
GACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTATGT
GGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGATT
GGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCATTG
AAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAATCC
GTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGATG
TTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGAAC
AAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGATTG
GTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAAATGTGTTGTCACTG
CAACTGGTGTAAACACTTTCTTTGGTCGTGCTGCAAATTTAGTACAAGAAACCGAAGGAC
ATGGTCATCTTCAAGTTATTCTTAGAAATATTGGTCTCTTTTGTATTAGTTTCATCGCCA
TTTGGGTACTCGTTGAXXXXXXXXXXTAAATTCCCAACCATTGCAACCGTTATCATTGCC
ATTTTGAATGATGGTACCATGTTAACAATCTCCAAAGATCGTGTAAGAGCTAGAAATGAA
CCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTA
GTAGGTTCAACCACTGTATTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCT
ATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCT
ATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGT
CCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGT
GTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTA
CATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGT
TTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGT
AAGATTGAACCAATCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAA
ATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGAT
GCTTTACATGCACAAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTAAAATA
ACAATAATATTTAAATAATGTATAATAATAGTTTTAAAATTTTAGCAACAAATAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
KANANGLTKAEAQKRLEEVGPNAIPDVKRYPILEFLYFMWNPLSWTMEVAAIVSIALLDW
VDFILICALLLLNATIGFIEENTAGNAVEALKNSLVSQIRCMRDGEWVMLPSPDLVPGDV
VMLKIGAIIPADCRVIEAEQVKIDQSSLTGESLPVTKKIGDEVYSGSAMKQGEAKCVVTA
TGVNTFFGRAANLVQETEGHGHLQVILRNIGLFCISFIAIWVLV---

---KFPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTTV
FFAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVI
FAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIP
MDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQE
THHKSVVTDNKVKITIIFK*ciiivlkf*qqi
Translated Amino Acid sequence (All Frames) 
Frame A:
*kqmqmv*qklklkkd*kkldqmqfqmlkdiqf*nfyilcgihyhglwklqllyqlhy*i
glily*fvhyyf*mqplvslkriqqvmq*rl*rihwlvksvv*emvnglcyhhqilyqvm
l*c*rlvplfqpivelsklnklksinlh*qvnlyqslkrlvmkftlvqq*nkvkqnvlsl
qlv*tlslvvlqi*ykkpkdmvifklfleilvsfvlvsspfgysl---

---*ipnhcnryhchfe*wyhvnnlqrscks*k*trsmesfrsihygtllwflfsrfnhc
ilcnhs*wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scn
lcfryvsnccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcldlvfplvhs
ngfh*irchlyspw*d*tnq*rctp*nlwlvw*rnpkgsnssls*sc*tts*krcftctr
nps*iccyr**s*nnnni*imynnsfkilatnn

Frame B:
kskckwfnks*sskkirrswtkcnsrc*kisnfrififyvesiimdygscsycinciirl
g*fyidlciitfecnhwfh*reysr*csrgfkefig*snplyerw*mgyvtitrsctr*c
cnvkdwchyssrl*syrs*ts*nrsifidr*iftsh*kdw**sllwfsnetr*skmcchc
nwckhflwscckfstrnrrtwssssys*kywslly*fhrhlgtr*---

---KFPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTTV
FFAIIHDGTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVI
FAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIP
MDFIKLGVTYILRGKIEPINKDALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQE
THHKSVVTDNKVKITIIFK*ciiivlkf*qqi

Frame C:
KANANGLTKAEAQKRLEEVGPNAIPDVKRYPILEFLYFMWNPLSWTMEVAAIVSIALLDW
VDFILICALLLLNATIGFIEENTAGNAVEALKNSLVSQIRCMRDGEWVMLPSPDLVPGDV
VMLKIGAIIPADCRVIEAEQVKIDQSSLTGESLPVTKKIGDEVYSGSAMKQGEAKCVVTA
TGVNTFFGRAANLVQETEGHGHLQVILRNIGLFCISFIAIWVLV---

---nsqplqplslpf*mmvpc*qspkiv*elemnqingifskyslwhfvmvsi**vqply
slqsfmmvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*s
llslclklllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfq
wisln*vspifsvvrlnqsikmhsvksmvglvkksqrkqlkslikllnnklkemlymhkk
piinlllpiiklk*q*ylnnv***f*nfsnk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB556 (VHB556Q) /CSM/VH/VHB5-C/VHB556Q.Seq.d/                       2759   0.0
VFN107 (VFN107Q) /CSM/VF/VFN1-A/VFN107Q.Seq.d/                       1443   0.0
CHL228 (CHL228Q) /CSM/CH/CHL2-B/CHL228Q.Seq.d/                       1443   0.0
CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/                       1429   0.0
VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1427   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1427   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                       1425   0.0
VHB591 (VHB591Q) /CSM/VH/VHB5-D/VHB591Q.Seq.d/                       1423   0.0
CHR710 (CHR710Q) /CSM/CH/CHR7-A/CHR710Q.Seq.d/                       1415   0.0
VHP623 (VHP623Q) /CSM/VH/VHP6-A/VHP623Q.Seq.d/                       1413   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB086374|AB086374.1 Sesbania rostrata srha5 mRNA for plasma membrane H+-ATPase, complete cds.    32   3e-04  5
AB177648|AB177648.1 Daucus carota DcPA 2 mRNA for plasma membrane H+-ATPase, complete cds.    34   0.001  3
AC005732|AC005732.1 Drosophila melanogaster DNA sequence (P1s DS03998 (D223), DS01595 (D161), and DS00065 (D263)), complete sequence.    46   0.068  1
AB177651|AB177651.1 Daucus carota DcPA 5 mRNA for plasma membrane H+-ATPase, complete cds.    36   0.18   3
AB020751|AB020751.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG21.    44   0.27   1
AC001226|AC001226.1 Genomic sequence from Human 13, complete sequence.    44   0.27   1
AB177647|AB177647.1 Daucus carota DcPA 1 mRNA for plasma membrane H+-ATPase, complete cds.    36   0.29   2
AC012392|AC012392.1 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV, complete sequence.    42   1.1    1
AC009398|AC009398.6 Genomic sequence for Arabidopsis thaliana BAC F20B24 from chromosome I, complete sequence.    42   1.1    1
AC007945|AC007945.3 Genomic sequence for Arabidopsis thaliana BAC F28C11 from chromosome I, complete sequence.    42   1.1    1
dna update 2007. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   517   e-145
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   517   e-145
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   249   1e-64
AY344962_1(AY344962|pid:none) Phytophthora infestans plasma memb...   248   3e-64
DQ533871_1(DQ533871|pid:none) Phytophthora nicotianae plasma mem...   248   4e-64
AL603947_1(AL603947|pid:none) Ustilago maydis gene for predicted...   248   5e-64
FB811294_1(FB811294|pid:none) Sequence 30567 from Patent WO20080...   241   5e-62
(Q7XPY2) RecName: Full=Plasma membrane ATPase;          EC=3.6.3...   241   6e-62
FB811240_1(FB811240|pid:none) Sequence 30513 from Patent WO20080...   240   1e-61
S60301(S60301)H+-exporting ATPase (EC 3.6.3.6) 9, anther-specifi...   240   1e-61
protein update 2009. 6.27
PSORT 

 psg: 0.40  gvh: 0.49  alm: 0.20  top: 0.53  tms: 0.60  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 76.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	  4.0 %: nuclear

>> prediction for VHB556 is pla
5' end seq. ID VHB556F
5' end seq. 
>VHB556F.Seq
TAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGTTG
GACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTATGT
GGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGATT
GGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCATTG
AAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAATCC
GTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGATG
TTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGAAC
AAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGATTG
GTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAAATGTGTTGTCACTG
CAACTGGTGTAAACACTTTCTTTGGTCGTGCTGCAAATTTAGTACAAGAAACCGAAGGAC
ATGGTCATCTTCAAGTTATTCTTAGAAATATTGGTCTCTTTTGTATTAGTTTCATCGCCA
TTTGGGTACTCGTTGANNNNNNNNNN
Length of 5' end seq. 686
3' end seq. ID VHB556Z
3' end seq. 
>VHB556Z.Seq
NNNNNNNNNNTAAATTCCCAACCATTGCAACCGTTATCATTGCCATTTTGAATGATGGTA
CCATGTTAACAATCTCCAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATC
TTTTCGAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCACTG
TATTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCT
TAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAA
CTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAA
TCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTG
GTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCC
AAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTC
CAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCA
ATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAA
CTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAG
AAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTAAAATAACAATAATATTTAAAT
AATGTATAATAATAGTTTTAAAATTTTAGCAACAAATAAT
Length of 3' end seq. 820
Connected seq. ID VHB556P
Connected seq. 
>VHB556P.Seq
TAAAAGCAAATGCAAATGGTTTAACAAAAGCTGAAGCTCAAAAAAGATTAGAAGAAGTTG
GACCAAATGCAATTCCAGATGTTAAAAGATATCCAATTTTAGAATTTTTATATTTTATGT
GGAATCCATTATCATGGACTATGGAAGTTGCAGCTATTGTATCAATTGCATTATTAGATT
GGGTTGATTTTATATTGATTTGTGCATTATTACTTTTGAATGCAACCATTGGTTTCATTG
AAGAGAATACAGCAGGTAATGCAGTAGAGGCTTTAAAGAATTCATTGGTTAGTCAAATCC
GTTGTATGAGAGATGGTGAATGGGTTATGTTACCATCACCAGATCTTGTACCAGGTGATG
TTGTAATGTTAAAGATTGGTGCCATTATTCCAGCCGATTGTAGAGTTATCGAAGCTGAAC
AAGTTAAAATCGATCAATCTTCATTGACAGGTGAATCTTTACCAGTCACTAAAAAGATTG
GTGATGAAGTTTACTCTGGTTCAGCAATGAAACAAGGTGAAGCAAAATGTGTTGTCACTG
CAACTGGTGTAAACACTTTCTTTGGTCGTGCTGCAAATTTAGTACAAGAAACCGAAGGAC
ATGGTCATCTTCAAGTTATTCTTAGAAATATTGGTCTCTTTTGTATTAGTTTCATCGCCA
TTTGGGTACTCGTTGA----------TAAATTCCCAACCATTGCAACCGTTATCATTGCC
ATTTTGAATGATGGTACCATGTTAACAATCTCCAAAGATCGTGTAAGAGCTAGAAATGAA
CCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTA
GTAGGTTCAACCACTGTATTCTTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCT
ATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCT
ATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGT
CCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGT
GTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTA
CATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGT
TTCCTTTGGTACATTCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGT
AAGATTGAACCAATCAATAAAGATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAA
ATCCCAAAGGAAGCAACTCAAGTCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGAT
GCTTTACATGCACAAGAAACCCATCATAAATCTGTTGTTACCGATAATAAAGTTAAAATA
ACAATAATATTTAAATAATGTATAATAATAGTTTTAAAATTTTAGCAACAAATAAT
Length of connected seq. 1486
Full length Seq ID -
Full length Seq. -
Length of full length seq. -