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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB545
Library VH
(Link to library)
Clone ID VHB545
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHB545 (VHB545Q) /CSM/VH/VHB5-B/VHB545Q.Seq.d/
AACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATTTATTT
ATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAAAAAAA
AAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
hahiikili*SIKNLYLFIYNIFLRGLQYTIKVLY*ykkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nthislky*ynpsrtyiylfiiff*edyntllkccisikk---


Frame B:
trtyh*niniihqelifiyl*yffkritihy*svvlv*kk---


Frame C:
hahiikili*SIKNLYLFIYNIFLRGLQYTIKVLY*ykkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP501 (VHP501Q) /CSM/VH/VHP5-A/VHP501Q.Seq.d/                        182   8e-46
VHP238 (VHP238Q) /CSM/VH/VHP2-B/VHP238Q.Seq.d/                        182   8e-46
VHM895 (VHM895Q) /CSM/VH/VHM8-D/VHM895Q.Seq.d/                        182   8e-46
VHL358 (VHL358Q) /CSM/VH/VHL3-C/VHL358Q.Seq.d/                        182   8e-46
VHI340 (VHI340Q) /CSM/VH/VHI3-B/VHI340Q.Seq.d/                        182   8e-46
VHH839 (VHH839Q) /CSM/VH/VHH8-B/VHH839Q.Seq.d/                        182   8e-46
VHH446 (VHH446Q) /CSM/VH/VHH4-B/VHH446Q.Seq.d/                        182   8e-46
VHH361 (VHH361Q) /CSM/VH/VHH3-C/VHH361Q.Seq.d/                        182   8e-46
VHG327 (VHG327Q) /CSM/VH/VHG3-B/VHG327Q.Seq.d/                        182   8e-46
VHE759 (VHE759Q) /CSM/VH/VHE7-C/VHE759Q.Seq.d/                        182   8e-46
own update 2003. 1.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CW939189|CW939189.1 TcB19.2_H09_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    42   3.4    1
CG766104|CG766104.1 TcB40.3_C02_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    42   3.4    1
dna update 2007. 4. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 165,346,800
protein update 2009. 6.27
PSORT 

 psg: 0.90  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHB545 is mit
5' end seq. ID VHB545F
5' end seq. 
>VHB545F.Seq
AACACGCACATATCATTAAAATATTAATATAATCCATCAAGAACTTATATTTATTTATTT
ATAATATTTTTTTAAGAGGATTACAATACACTATTAAAGTGTTGTATTAGTATAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -