>VHB534 (VHB534Q) /CSM/VH/VHB5-B/VHB534Q.Seq.d/
AGTTATCGTATTGATATTCCCATACTATTTATTCAAAAATATTTAGCCAAACCATAAAAT
GGAATACGATTTAACCAAACAAATATGTTCATTCTTAGATGCACATATGATGCTTCCATT
AATTAACTATCTCAAAGATACTCAACAATATCAAGAGAATGAAATTAATAAAGCAATGGC
AGATATTTTATCACAAACTGGTTGTTGTGATTATGCAATCAATGCTTATGAATCAATTGG
TAGAGATACAGCACCACTCCAAGCCAAAAAACAAGAATTGGTTGGAGAACTTAATAAATT
AAAGGAACAATGTTCATTTGTAACTCAATATATTGAATCAAAGAAACAACAAAAAGAACA
ACAAAAAGAATTAAAAGAACAACAAAAAGAACAACAAAAAGAAAAAGATACAGATAAAAC
TACACCAACTACTACAGATGAAACAACTACCACCACCACTACAGCACCAACCACCACCAC
TACTACAACAACAACAACTATTACACCAATTACAGTTATTCCATTTTCACAATTATTAGA
GAAAATTACACCAGAAATTTTAGATAGTATATATAGATTTTCAAAATTATTATTTGAGAT
TGGACAATATGGATCAGXXXXXXXXXXAAAAGTTTTGANAAATGATTTCTTCCTCAATAC
CTGTGTCGATGAATTCATGGAAAATGCTCGTGTTTGTGTCTTTGAAACTTATTGTAATAT
TTTAGAATCAATTGATATTGATATGTTATGCAAAAATTTAAGAATTGATCCAGAATCATC
AGAGAAATGGATCGTTGAAGCAATTAGAAATANTAGATTCTCTGCAAAGATTGATTCAGC
AAATAATCAAATTNAAATGTTTACTCAACATNATTCCTATCGTCAAGTTATGGATAAGAC
AAAAGCATTATTTAATNGTGGTATCGAAATGGTNGTAGGTATCAATGAATATAGAAGTCA
ACAAAATAGAAAAGGTGGTGATAACCGTAAGAATCAACGTGGTCAAAATAGAAATCAACA
AAATCAACAAAACCAACAATNTAATGAATCAAATGAANCAACAACAACAACAACAACTGC
AGCAGCAGCTTACAACAACAACTACTACANCTGCAACTCCAACTTCCGTTTAAATTTTAT
TATTAAAATTTTAATNACACACANTCATCCATCCACCATCATCTGAAATAATAAAATCAC
GCCGCACNCCGCACCCACATCCGCACCCACATCCGCACCCATCACTTTCACATTTATTCA
TTCATTCATTTAGATATTAATATAGATAGAAGATAACGAATATAGGATATATAA

vivlifpyylfkni*PNHKMEYDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMA
DILSQTGCCDYAINAYESIGRDTAPLQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQ
QKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLE
KITPEILDSIYRFSKLLFEIGQYGS---

---KVLXNDFFLNTCVDEFMENARVCVFETYCNILESIDIDMLCKNLRIDPESSEKWIVE
AIRNXRFSAKIDSANNQIXMFTQHXSYRQVMDKTKALFNXGIEMVVGINEYRSQQNRKGG
DNRKNQRGQNRNQQNQQNQQXNESNEXTTTTTTAAAAYNNNYYXCNSNFRLNFIIKILXT
HXHPSTII*nnkitphxaptsaptsapitftfihsfi*ili*iedneyriy

Frame A:
syridipilfiqkylakp*ngirfnqtnmfilrctydasin*lsqrystisre*n**sng
ryfitnwll*lcnqcl*inw*rysttpsqktrigwrt**ikgtmficnsiy*ikettkrt
tkrikrttkrttkrkryr*nytnyyr*nnyhhhystnhhhyynnnnyytnysysiftiir
enytrnfr*yi*ifkiii*dwtiwi---

---ksfxk*flpqylcr*ihgkcsclcl*nll*yfrin*y*yvmqkfkn*sriiremdr*
sn*kx*ilckd*fsk*snxnvystxflsssyg*dksii*xwyrngxryq*i*kstk*krw
**p*estwsk*kstkstkptx**ik*xnnnnnncssslqqqllxlqlqlpfkfyy*nfnx
txssihhhlk**nhaaxrthirthirthhfhiysfihldinidrr*ri*di*

Frame B:
vivlifpyylfkni*PNHKMEYDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMA
DILSQTGCCDYAINAYESIGRDTAPLQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQ
QKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLE
KITPEILDSIYRFSKLLFEIGQYGS---

---KVLXNDFFLNTCVDEFMENARVCVFETYCNILESIDIDMLCKNLRIDPESSEKWIVE
AIRNXRFSAKIDSANNQIXMFTQHXSYRQVMDKTKALFNXGIEMVVGINEYRSQQNRKGG
DNRKNQRGQNRNQQNQQNQQXNESNEXTTTTTTAAAAYNNNYYXCNSNFRLNFIIKILXT
HXHPSTII*nnkitphxaptsaptsapitftfihsfi*ili*iedneyriy

Frame C:
lsy*yshtiyskifsqtikwnti*pnkyvhs*mhi*cfh*ltiskilnnikrmklikqwq
ifyhklvvvimqsmlmnqlveiqhhskpknknwlenlin*rnnvhl*lnilnqrnnkknn
kkn*knnkknnkkkkiqiklhqllqmkqlppplqhqpppllqqqqllhqlqlfhfhny*r
klhqkf*ivyidfqnyylrldnmdq---

---kf*xmisssipvsmnswkmlvfvslklivif*nqlilicyaki*eliqnhqrngslk
qleixdslqrliqqiikxkcllnxipivklwirqkhylxvvskwx*vsmnievnkiekvv
itvrinvvkieinkinktnnxmnqmxqqqqqqlqqqlttttttxatptsv*illlkf*xh
txihppsseiiksrrtphphphphphpslshlfihsfry*yr*kitnigyi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB534 (VHB534Q) /CSM/VH/VHB5-B/VHB534Q.Seq.d/                        928   0.0
AFI289 (AFI289Q) /CSM/AF/AFI2-D/AFI289Q.Seq.d/                        743   0.0
VFG167 (VFG167Q) /CSM/VF/VFG1-C/VFG167Q.Seq.d/                        706   0.0
VHM811 (VHM811Q) /CSM/VH/VHM8-A/VHM811Q.Seq.d/                        666   0.0
CFE173 (CFE173Q) /CSM/CF/CFE1-D/CFE173Q.Seq.d/                        666   0.0
VFG684 (VFG684Q) /CSM/VF/VFG6-D/VFG684Q.Seq.d/                        662   0.0
SFC466 (SFC466Q) /CSM/SF/SFC4-C/SFC466Q.Seq.d/                        654   0.0
CHC705 (CHC705Q) /CSM/CH/CHC7-A/CHC705Q.Seq.d/                        642   0.0
SFK440 (SFK440Q) /CSM/SF/SFK4-B/SFK440Q.Seq.d/                        626   e-178
VFA355 (VFA355Q) /CSM/VF/VFA3-C/VFA355Q.Seq.d/                        618   e-176

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI626736|BI626736.1 RH67775.5prime RH Drosophila melanogaster normalized Head pFlc-1Drosophila melanogaster cDNA clone RH67775 5, mRNA sequence.    58   7e-04  1
BI607928|BI607928.1 RH12029.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH12029 5, mRNA sequence.    58   7e-04  1
BI592032|BI592032.1 RH09633.5prime RH Drosophila melanogaster normalized Head pFlc-1 Drosophila melanogaster cDNA clone RH09633 5, mRNA sequence.    58   7e-04  1
CQ587331|CQ587331.1 Sequence 15089 from Patent WO0171042.          58   7e-04  1
CQ587330|CQ587330.1 Sequence 15088 from Patent WO0171042.          58   7e-04  1
AC019823|AC019823.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    58   7e-04  1
AY119230|AY119230.1 Drosophila melanogaster SD17695 full insert cDNA.    58   7e-04  1
AE014297|AE014297.2 Drosophila melanogaster chromosome 3R, complete sequence.    58   7e-04  1
AC008205|AC008205.7 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone BACR33F18, complete sequence.    58   7e-04  1
AC027281|AC027281.10 Homo sapiens chromosome 16 clone RP11-424M24, complete sequence.    36   0.022  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CC5) RecName: Full=Eukaryotic translation initiation factor ...   236   1e-60
BT078763_1(BT078763|pid:none) Lepeophtheirus salmonis clone lsal...   102   2e-20
FN357907_5(FN357907|pid:none) Schistosoma mansoni genome sequenc...   100   2e-19
FN314005_1(FN314005|pid:none) Schistosoma japonicum isolate Anhu...    99   3e-19
AY810265_1(AY810265|pid:none) Schistosoma japonicum SJCHGC05239 ...    99   3e-19
FN318014_1(FN318014|pid:none) Schistosoma japonicum isolate Anhu...    99   3e-19
AY398340_1(AY398340|pid:none) Danio rerio clone RK139A2H06 eukar...    99   4e-19
AY648778_1(AY648778|pid:none) Danio rerio eukaryotic translation...    99   4e-19
BC017887_1(BC017887|pid:none) Homo sapiens eukaryotic translatio...    98   6e-19
CR457029_1(CR457029|pid:none) Homo sapiens full open reading fra...    98   6e-19

 psg: 0.76  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHB534 is cyt

>VHB534F.Seq
AGTTATCGTATTGATATTCCCATACTATTTATTCAAAAATATTTAGCCAAACCATAAAAT
GGAATACGATTTAACCAAACAAATATGTTCATTCTTAGATGCACATATGATGCTTCCATT
AATTAACTATCTCAAAGATACTCAACAATATCAAGAGAATGAAATTAATAAAGCAATGGC
AGATATTTTATCACAAACTGGTTGTTGTGATTATGCAATCAATGCTTATGAATCAATTGG
TAGAGATACAGCACCACTCCAAGCCAAAAAACAAGAATTGGTTGGAGAACTTAATAAATT
AAAGGAACAATGTTCATTTGTAACTCAATATATTGAATCAAAGAAACAACAAAAAGAACA
ACAAAAAGAATTAAAAGAACAACAAAAAGAACAACAAAAAGAAAAAGATACAGATAAAAC
TACACCAACTACTACAGATGAAACAACTACCACCACCACTACAGCACCAACCACCACCAC
TACTACAACAACAACAACTATTACACCAATTACAGTTATTCCATTTTCACAATTATTAGA
GAAAATTACACCAGAAATTTTAGATAGTATATATAGATTTTCAAAATTATTATTTGAGAT
TGGACAATATGGATCAGNNNNNNNNNN

>VHB534Z.Seq
NNNNNNNNNNAAAAGTTTTGANAAATGATTTCTTCCTCAATACCTGTGTCGATGAATTCA
TGGAAAATGCTCGTGTTTGTGTCTTTGAAACTTATTGTAATATTTTAGAATCAATTGATA
TTGATATGTTATGCAAAAATTTAAGAATTGATCCAGAATCATCAGAGAAATGGATCGTTG
AAGCAATTAGAAATANTAGATTCTCTGCAAAGATTGATTCAGCAAATAATCAAATTNAAA
TGTTTACTCAACATNATTCCTATCGTCAAGTTATGGATAAGACAAAAGCATTATTTAATN
GTGGTATCGAAATGGTNGTAGGTATCAATGAATATAGAAGTCAACAAAATAGAAAAGGTG
GTGATAACCGTAAGAATCAACGTGGTCAAAATAGAAATCAACAAAATCAACAAAACCAAC
AATNTAATGAATCAAATGAANCAACAACAACAACAACAACTGCAGCAGCAGCTTACAACA
ACAACTACTACANCTGCAACTCCAACTTCCGTTTAAATTTTATTATTAAAATTTTAATNA
CACACANTCATCCATCCACCATCATCTGAAATAATAAAATCACGCCGCACNCCGCACCCA
CATCCGCACCCACATCCGCACCCATCACTTTCACATTTATTCATTCATTCATTTAGATAT
TAATATAGATAGAAGATAACGAATATAGGATATATAA

>VHB534P.Seq
AGTTATCGTATTGATATTCCCATACTATTTATTCAAAAATATTTAGCCAAACCATAAAAT
GGAATACGATTTAACCAAACAAATATGTTCATTCTTAGATGCACATATGATGCTTCCATT
AATTAACTATCTCAAAGATACTCAACAATATCAAGAGAATGAAATTAATAAAGCAATGGC
AGATATTTTATCACAAACTGGTTGTTGTGATTATGCAATCAATGCTTATGAATCAATTGG
TAGAGATACAGCACCACTCCAAGCCAAAAAACAAGAATTGGTTGGAGAACTTAATAAATT
AAAGGAACAATGTTCATTTGTAACTCAATATATTGAATCAAAGAAACAACAAAAAGAACA
ACAAAAAGAATTAAAAGAACAACAAAAAGAACAACAAAAAGAAAAAGATACAGATAAAAC
TACACCAACTACTACAGATGAAACAACTACCACCACCACTACAGCACCAACCACCACCAC
TACTACAACAACAACAACTATTACACCAATTACAGTTATTCCATTTTCACAATTATTAGA
GAAAATTACACCAGAAATTTTAGATAGTATATATAGATTTTCAAAATTATTATTTGAGAT
TGGACAATATGGATCAG----------AAAAGTTTTGANAAATGATTTCTTCCTCAATAC
CTGTGTCGATGAATTCATGGAAAATGCTCGTGTTTGTGTCTTTGAAACTTATTGTAATAT
TTTAGAATCAATTGATATTGATATGTTATGCAAAAATTTAAGAATTGATCCAGAATCATC
AGAGAAATGGATCGTTGAAGCAATTAGAAATANTAGATTCTCTGCAAAGATTGATTCAGC
AAATAATCAAATTNAAATGTTTACTCAACATNATTCCTATCGTCAAGTTATGGATAAGAC
AAAAGCATTATTTAATNGTGGTATCGAAATGGTNGTAGGTATCAATGAATATAGAAGTCA
ACAAAATAGAAAAGGTGGTGATAACCGTAAGAATCAACGTGGTCAAAATAGAAATCAACA
AAATCAACAAAACCAACAATNTAATGAATCAAATGAANCAACAACAACAACAACAACTGC
AGCAGCAGCTTACAACAACAACTACTACANCTGCAACTCCAACTTCCGTTTAAATTTTAT
TATTAAAATTTTAATNACACACANTCATCCATCCACCATCATCTGAAATAATAAAATCAC
GCCGCACNCCGCACCCACATCCGCACCCACATCCGCACCCATCACTTTCACATTTATTCA
TTCATTCATTTAGATATTAATATAGATAGAAGATAACGAATATAGGATATATAA