>VHB532 (VHB532Q) /CSM/VH/VHB5-B/VHB532Q.Seq.d/
ATTTNTTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACACAACAAGCAT
TAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAGTTGGATCAA
AATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAATGGCATTCAA
GTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAGATTATCAAT
CATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGGAATTCTCAA
TTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAAAAGTAGACG
AATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAACAAAATGAAA
TCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATTTATTTGAAG
CTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATACTAAATTTGAACATACTAAAT
TTGATCATTCTAAATTTGATTCAACTTTACTTAAAATTTCAACTCAAGCATTAAATTATT
GTTCAAAATATCAAAGAAXXXXXXXXXX

xfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHSS
LEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVDE
LKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEHTKF
DHSKFDSTLLKISTQALNYCSKYQR---

Frame A:
ixlynyfifi*ikkcqhnkh*lrlmnml*akqmi*lkldqn*eh*vs*eiy*vivvngiq
v*nklchytfhyvlnn*iinh*emvfiiskfqschkrnsqlyh*kislkkslhqlnkk*t
n*krklkkkikrih*lnkmkshslihnklsysli*niylklikq*lkyslvkilnlniln
liilnliqlylkfqlkh*iivqnik---


Frame B:
fxyiiisflyk*knvnttsissg**tcfkpsk*fn*swikiksikclkrfik*s*smafk
frtnyviirfimc*tirlsiikrwyssfqsfnhvtkgilnctirkyl*rnhytn*tksrr
ikren*krksresis*tk*nlth*sttnslillyeifi*sl*snd*sthssky*i*ty*i
*sf*i*fnft*nfnssikllfkisk---


Frame C:
xfi*LFHFYINKKMSTQQALAQANEHALSQANDLIKVGSKLRALSVLRDLLSDRSQWHSS
LEQIMSLYVSLCAEQLDYQSLRDGIHHFKVSIMSQKEFSIVPLENIFKEIITPIEQKVDE
LKEKIEKENQENPLVEQNEISLIDPQQTLLFSYMKYLFEAYKAMIEVLTRQNTKFEHTKF
DHSKFDSTLLKISTQALNYCSKYQR---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB532 (VHB532Q) /CSM/VH/VHB5-B/VHB532Q.Seq.d/                        642   0.0
VHI342 (VHI342Q) /CSM/VH/VHI3-B/VHI342Q.Seq.d/                        640   0.0
AHN109 (AHN109Q) /CSM/AH/AHN1-A/AHN109Q.Seq.d/                        640   0.0
AHG627 (AHG627Q) /CSM/AH/AHG6-B/AHG627Q.Seq.d/                        640   0.0
AHG546 (AHG546Q) /CSM/AH/AHG5-B/AHG546Q.Seq.d/                        640   0.0
AHB420 (AHB420Q) /CSM/AH/AHB4-A/AHB420Q.Seq.d/                        640   0.0
VHQ486 (VHQ486Q) /CSM/VH/VHQ4-D/VHQ486Q.Seq.d/                        638   0.0
VHQ255 (VHQ255Q) /CSM/VH/VHQ2-C/VHQ255Q.Seq.d/                        638   0.0
VHP666 (VHP666Q) /CSM/VH/VHP6-C/VHP666Q.Seq.d/                        638   0.0
VHO837 (VHO837Q) /CSM/VH/VHO8-B/VHO837Q.Seq.d/                        638   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   446   0.0    5
U07703|U07703.1 Chironomus thummi 7B globin gene cluster.          38   0.010  4
CW376326|CW376326.1 fsbb001f054c14f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f054c14, genomic survey sequence.    52   0.019  1
CW143479|CW143479.1 104_535_11137435_148_34958_076 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11137435, genomic survey sequence.    52   0.019  1
EK178375|EK178375.1 1095458108686 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005697918 3', genomic survey sequence.    36   0.18   2
AX344202|AX344202.1 Sequence 49 from Patent WO0200926.             48   0.30   1
AL426340|AL426340.1 clone BA0AB012C07 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    48   0.30   1
AE006268|AE006268.1 Lactococcus lactis subsp. lactis IL1403 section 30 of 218 of the complete genome.    36   0.73   2
DT462669|DT462669.1 GH_CHX12G22.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX12G22 3', mRNA sequence.    46   1.2    1
DT460156|DT460156.1 GH_ON38N18.r GH_ON Gossypium hirsutum cDNA clone GH_ON38N18 3', mRNA sequence.    46   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN357292_143(FN357292|pid:none) Schistosoma mansoni genome seque...    62   1e-08
FN317268_1(FN317268|pid:none) Schistosoma japonicum isolate Anhu...    59   1e-07
CP001328_373(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    56   9e-07
BC066670_1(BC066670|pid:none) Danio rerio eukaryotic translation...    55   1e-06
BC064926_1(BC064926|pid:none) Homo sapiens eukaryotic translatio...    55   2e-06
BC107776_1(BC107776|pid:none) Homo sapiens eukaryotic translatio...    55   2e-06
BC033769_1(BC033769|pid:none) Homo sapiens eukaryotic translatio...    55   2e-06
BC054342_1(BC054342|pid:none) Homo sapiens eukaryotic translatio...    55   2e-06
D50929_1(D50929|pid:none) Homo sapiens mRNA for KIAA0139 gene, p...    55   2e-06
AK172899_1(AK172899|pid:none) Mus musculus mRNA for mKIAA0139 pr...    54   3e-06

 psg: 0.79  gvh: 0.45  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHB532 is nuc

>VHB532F.Seq
ATTTNTTTATATAATTATTTCATTTTTATATAAATAAAAAAATGTCAACACAACAAGCAT
TAGCTCAGGCTAATGAACATGCTTTAAGCCAAGCAAATGATTTAATTAAAGTTGGATCAA
AATTAAGAGCATTAAGTGTCTTAAGAGATTTATTAAGTGATCGTAGTCAATGGCATTCAA
GTTTAGAACAAATTATGTCATTATACGTTTCATTATGTGCTGAACAATTAGATTATCAAT
CATTAAGAGATGGTATTCATCATTTCAAAGTTTCAATCATGTCACAAAAGGAATTCTCAA
TTGTACCATTAGAAAATATCTTTAAAGAAATCATTACACCAATTGAACAAAAAGTAGACG
AATTAAAAGAGAAAATTGAAAAAGAAAATCAAGAGAATCCATTAGTTGAACAAAATGAAA
TCTCACTCATTGATCCACAACAAACTCTCTTATTCTCTTATATGAAATATTTATTTGAAG
CTTATAAAGCAATGATTGAAGTACTCACTCGTCAAAATACTAAATTTGAACATACTAAAT
TTGATCATTCTAAATTTGATTCAACTTTACTTAAAATTTCAACTCAAGCATTAAATTATT
GTTCAAAATATCAAAGAANNNNNNNNNN