>VHB507 (VHB507Q) /CSM/VH/VHB5-A/VHB507Q.Seq.d/
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAGAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCAXXXXXXXXXXTCTT
ATACCACTCGTTGTATTTTAGGTGAAGAANCAACTTATAGAACTGTTAAACCAAATACCA
ATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAG
ATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTT
CTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTT
CACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAA
AAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCAC
CAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTG
GTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTA
AGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAA
AATACAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGA

yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisrtaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*HGTMHH
PMGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILAS---

---SYTTRCILGEEXTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYESADDSSS
DNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAATQCVGGVN
ATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQKLLKMVGFS
KVGPKYSVIGIKPNSLAD

Frame A:
ilfffticlykqiggnykmkissilfifiaiivglalsqntiptykqnsinwkqfqplyt
nkddyvlivdtrsknvlkrstnggidwssnvldkqgniiygnagyyqrddnimvvnfpsy
gktqisvsndagqtfstsavfphkvvsvsphldieglviarsdnfilisedfgltwnnas
sng*cfihtrwfklsnrpimgsireicsvfrnfsi---

---SYTTRCILGEEXTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYESADDSSS
DNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAATQCVGGVN
ATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQKLLKMVGFS
KVGPKYSVIGIKPNSLAD

Frame B:
yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisrtaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*HGTMHH
PMGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILAS---

---liplvvf*vkxqliellnqipivi*pnkhkfqinivnvqskilnvilvtkvqtiavp
immvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkpisnqkvseeslphnv*vvlm
qlihqrlscvhqkilqvvakvgslvllllfll*lvlvvlvstflriqisnkny*kwlvfq
rsvqntvlsvlnqth*lm

Frame C:
iiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*aeqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqcii
qwvmfyshqvvqafqpthygihqrnlqcfsqf*h---

---lyhslyfr*rxnl*nc*tkyqllydptstnfk*il*mysrrf*m*ywlrkcrr*qfr
**wfylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrchtmcrwc*c
nlftrdchvsikkffkwwqrldrwccycyscfswswwfwflrf*esrfqtkiikngwffk
grskiqcyry*tklis**

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB507 (VHB507Q) /CSM/VH/VHB5-A/VHB507Q.Seq.d/                       2399   0.0
VHP637 (VHP637Q) /CSM/VH/VHP6-B/VHP637Q.Seq.d/                       1273   0.0
VHK602 (VHK602Q) /CSM/VH/VHK6-A/VHK602Q.Seq.d/                       1273   0.0
VHA392 (VHA392Q) /CSM/VH/VHA3-D/VHA392Q.Seq.d/                       1265   0.0
VHE149 (VHE149Q) /CSM/VH/VHE1-C/VHE149Q.Seq.d/                       1261   0.0
VHP137 (VHP137Q) /CSM/VH/VHP1-B/VHP137Q.Seq.d/                       1257   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1257   0.0
VHO514 (VHO514Q) /CSM/VH/VHO5-A/VHO514Q.Seq.d/                       1257   0.0
VHL318 (VHL318Q) /CSM/VH/VHL3-A/VHL318Q.Seq.d/                       1257   0.0
VHK849 (VHK849Q) /CSM/VH/VHK8-C/VHK849Q.Seq.d/                       1257   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING INPROGRESS ***.    36   0.050  6
AR204346|AR204346.1 Sequence 242 from patent US 6365723.           46   0.056  1
AE005174|AE005174.2 Escherichia coli O157:H7 EDL933, complete genome.    46   0.056  1
AC005504|AC005504.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38   0.12   4
AC011277|AC011277.4 Homo sapiens clone RP11-13J3, WORKING DRAFT SEQUENCE, 16 unordered pieces.    44   0.22   1
AC187001|AC187001.7 Canis Familiaris chromosome 2, clone XX-425F13, complete sequence.    44   0.22   1
AC089993|AC089993.2 Bos taurus clone RP42-553M7, complete sequence.    44   0.22   1
AC146224|AC146224.2 Pan troglodytes BAC clone RP43-27B20 from chromosome 7, complete sequence.    44   0.22   1
AC025294|AC025294.14 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence.    36   0.38   3
AC087860|AC087860.2 Bos taurus clone RP42-135P2, complete sequence.    42   0.58   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    71   9e-11
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    66   3e-09
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    66   3e-09
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    64   1e-08
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    63   2e-08
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    63   2e-08
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    60   1e-07
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    60   1e-07
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    58   8e-07
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    58   8e-07

 psg: 0.75  gvh: 0.54  alm: 0.22  top: 0.67  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHB507 is nuc

>VHB507F.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAGAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCANNNNNNNNNN

>VHB507Z.Seq
NNNNNNNNNNTCTTATACCACTCGTTGTATTTTAGGTGAAGAANCAACTTATAGAACTGT
TAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGA
ATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTC
CGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCG
TAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAAC
CTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAA
TGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAA
AGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGG
TTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTC
AAAGGTCGGTCCAAAATACAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGA

>VHB507P.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAGAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCA----------TCTT
ATACCACTCGTTGTATTTTAGGTGAAGAANCAACTTATAGAACTGTTAAACCAAATACCA
ATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAG
ATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTT
CTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTT
CACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAA
AAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCAC
CAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTG
GTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTA
AGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAA
AATACAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGA