NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB466
Library VH
(Link to library)
Clone ID VHB466
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16305-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHB466 (VHB466Q) /CSM/VH/VHB4-C/VHB466Q.Seq.d/
XXXXXXXXXXAATTTGTGCAGTTTTCTTACGTTTTGTTGAACAACACAAAAATTTGACAA
ACTCTTCAAATACAAATCGTACCTCTTCCATTTCACCAGATATTCTTTACATTGCCAAGG
TTGAAAATGTTCGTCACTCCATTCATTTCTATCCACTCGATAATTCTGAAACTGACGCCG
CTGCCAATGGTGCCAATGGTGATGATTCCTCAAGATTCATGGTTCAATTCATCGATCAAG
AGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAAATTTAGTCGATGCAACTCCACAAT
TTATCAAATTAAACATTGGTGGTATCTCTCATCGTTTCCAAATTCACGATAAAACTTCCA
CATCCTACACCCTTCAATTCCATGGTTCAAAGATTCCAGTCACCGTTTTATCTCCAGAAG
AAGATTTACTCTGCCAATACATGCCAGTTAAAAAAACTGTTGACTCTTCAAACTCTTTAA
TCTCACCAATGCCTGGTACTATCCTCTCTTTGGCCGTTAATGTAGGTGATAAAGTTGTCC
TTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAATGCAAAATGTTCTCAGAGCTCCAA
AAGATTGTGAAATTAAATCAATCAATGTTAAACCTGGTCAAGTCGTTTCTGTTGATGAAG
TTTTAATGATTTTAAATAAAAATAAAAATAAAATAAAAATAAAAATAAAATAAAATAAAA
AAATAAAATAAAAAAAATATTTAATTAAAAAATT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---ICAVFLRFVEQHKNLTNSSNTNRTSSISPDILYIAKVENVRHSIHFYPLDNSETDAA
ANGANGDDSSRFMVQFIDQEKDGQVIKEFELNLVDATPQFIKLNIGGISHRFQIHDKTST
SYTLQFHGSKIPVTVLSPEEDLLCQYMPVKKTVDSSNSLISPMPGTILSLAVNVGDKVVL
GQELCIVEAMKMQNVLRAPKDCEIKSINVKPGQVVSVDEVLMILNKNKNKIKIKIK*nkk
ik*kkylikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ICAVFLRFVEQHKNLTNSSNTNRTSSISPDILYIAKVENVRHSIHFYPLDNSETDAA
ANGANGDDSSRFMVQFIDQEKDGQVIKEFELNLVDATPQFIKLNIGGISHRFQIHDKTST
SYTLQFHGSKIPVTVLSPEEDLLCQYMPVKKTVDSSNSLISPMPGTILSLAVNVGDKVVL
GQELCIVEAMKMQNVLRAPKDCEIKSINVKPGQVVSVDEVLMILNKNKNKIKIKIK*nkk
ik*kkylikk


Frame B:
---fvqfsyvllnntki*qtlqiqivplpfhqifftlprlkmfvtpfisihsiilkltpl
pmvpmvmipqdswfnssikrkmvkslrnln*i*smqlhnlsn*tlvvslivskftiklph
ptpfnsmvqrfqspfylqkkiysantcqlkklltlqtl*shqclvlsslwplm*viklsl
vknfvslkq*kckmfselqkivklnqsmlnlvksfllmkf**f*ikikik*k*k*nkikk
*nkkni*lkn


Frame C:
---lcsfltfc*ttqkfdklfkyksylfhftryslhcqg*kcsslhsflstr*f*n*rrc
qwcqw**flkihgsihrsrerwssh*gi*ikfsrcnstiyqikhwwylssfpnsr*nfhi
lhpsipwfkdsshrfisrrrftlpihas*knc*lfklfnltnawyyplfgr*cr**scpw
srtlyr*snenakcsqsskrl*n*inqc*twssrfc**sfndfk*k*k*nknknkik*kn
kikkifn*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB466 (VHB466Q) /CSM/VH/VHB4-C/VHB466Q.Seq.d/                       1271   0.0
VHK744 (VHK744Q) /CSM/VH/VHK7-B/VHK744Q.Seq.d/                       1265   0.0
VHB805 (VHB805Q) /CSM/VH/VHB8-A/VHB805Q.Seq.d/                       1265   0.0
VHQ468 (VHQ468Q) /CSM/VH/VHQ4-C/VHQ468Q.Seq.d/                       1261   0.0
VHC856 (VHC856Q) /CSM/VH/VHC8-C/VHC856Q.Seq.d/                       1261   0.0
AHA745 (AHA745Q) /CSM/AH/AHA7-B/AHA745Q.Seq.d/                       1261   0.0
AHO753 (AHO753Q) /CSM/AH/AHO7-C/AHO753Q.Seq.d/                       1251   0.0
VHD172 (VHD172Q) /CSM/VH/VHD1-C/VHD172Q.Seq.d/                       1249   0.0
AHF592 (AHF592Q) /CSM/AH/AHF5-D/AHF592Q.Seq.d/                       1249   0.0
VHC816 (VHC816Q) /CSM/VH/VHC8-A/VHC816Q.Seq.d/                       1245   0.0
own update 2003. 1.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC825162|EC825162.1 SME00002866 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    70   1e-07  1
DU745490|DU745490.1 ASNC2815.g2 HF10_10-07-02 uncultured marine microorganism HF10_10-07-02 genomic clone HF0010_039G04, genomic survey sequence.    50   0.006  2
DD419614|DD419614.1 GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE HAEMOPHILUS INFLUENZAE.    54   0.006  1
DD419394|DD419394.1 GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE HAEMOPHILUS INFLUENZAE.    54   0.006  1
CS220408|CS220408.1 Sequence 2423 from Patent WO2005111066.        54   0.006  1
CQ878030|CQ878030.1 Sequence 6 from Patent WO2004081206.           54   0.006  1
CQ878028|CQ878028.1 Sequence 4 from Patent WO2004081206.           54   0.006  1
CQ873070|CQ873070.1 Sequence 683 from Patent WO2004078949.         54   0.006  1
CQ872819|CQ872819.1 Sequence 432 from Patent WO2004078949.         54   0.006  1
BD426631|BD426631.1 The Nucleotide Sequence of the Haemophilus influenzae Rd Genome,Fragments Thereof, and Uses Thereof.    54   0.006  1
dna update 2007. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000830_719(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c...    92   2e-17
CP000628_1885(CP000628|pid:none) Agrobacterium radiobacter K84 c...    87   4e-16
FN357591_3(FN357591|pid:none) Schistosoma mansoni genome sequenc...    87   4e-16
FN357591_4(FN357591|pid:none) Schistosoma mansoni genome sequenc...    87   4e-16
BX088652_4(BX088652|pid:none) Zebrafish DNA sequence from clone ...    87   6e-16
CP000874_2061(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN...    86   1e-15
CP000927_3152(CP000927|pid:none) Caulobacter sp. K31, complete g...    86   1e-15
CP000927_2989(CP000927|pid:none) Caulobacter sp. K31, complete g...    86   1e-15
CP000490_835(CP000490|pid:none) Paracoccus denitrificans PD1222 ...    86   2e-15
CP000031_1079(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple...    86   2e-15
protein update 2009. 6.27
PSORT 

 psg: 0.54  gvh: 0.32  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 32.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for VHB466 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB466Z
3' end seq. 
>VHB466Z.Seq
NNNNNNNNNNAATTTGTGCAGTTTTCTTACGTTTTGTTGAACAACACAAAAATTTGACAA
ACTCTTCAAATACAAATCGTACCTCTTCCATTTCACCAGATATTCTTTACATTGCCAAGG
TTGAAAATGTTCGTCACTCCATTCATTTCTATCCACTCGATAATTCTGAAACTGACGCCG
CTGCCAATGGTGCCAATGGTGATGATTCCTCAAGATTCATGGTTCAATTCATCGATCAAG
AGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAAATTTAGTCGATGCAACTCCACAAT
TTATCAAATTAAACATTGGTGGTATCTCTCATCGTTTCCAAATTCACGATAAAACTTCCA
CATCCTACACCCTTCAATTCCATGGTTCAAAGATTCCAGTCACCGTTTTATCTCCAGAAG
AAGATTTACTCTGCCAATACATGCCAGTTAAAAAAACTGTTGACTCTTCAAACTCTTTAA
TCTCACCAATGCCTGGTACTATCCTCTCTTTGGCCGTTAATGTAGGTGATAAAGTTGTCC
TTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAATGCAAAATGTTCTCAGAGCTCCAA
AAGATTGTGAAATTAAATCAATCAATGTTAAACCTGGTCAAGTCGTTTCTGTTGATGAAG
TTTTAATGATTTTAAATAAAAATAAAAATAAAATAAAAATAAAAATAAAATAAAATAAAA
AAATAAAATAAAAAAAATATTTAATTAAAAAATT
Length of 3' end seq. 754
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -