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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB451
Library VH
(Link to library)
Clone ID VHB451
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15638-1
Original site URL
Representative seq. ID VHB451P
(Link to Original site)
Representative DNA sequence 
>VHB451 (VHB451Q) /CSM/VH/VHB4-C/VHB451Q.Seq.d/
GAATGTGTGCCCACATAAAAATTAAAGATGAATAAAGTTATATTATTATTCTTTTTATTT
ATAACATATAGTAGTAATCTTTTAGTTCAATCGCAAACTTTAACAAATATAACAAAATAT
CCAGATACATCGCAATTACAATACGATCAATCATACTTAAGAATATGTACAAATCTTTTT
GAACAAATTGTCAATTTTAATACAACTTTATCTGTTGAATTTGTTTATGATGCATGTTAT
ACTTGTGAATATCAAAATTTAGTTGTTTTGGATTCATCAAGTTCAAAATATATTATTATG
CCAAGTACGTTTGGATATAAATTTAATATTAGTGTATTATATAATGGAAAAGCACAAGAT
GATATATTATATTTATCATTTCATGAAACATTTGGTGAATATGGTATCTATGACATTAGT
GTAAACATTTCTACAGTAAATGTAACAAAAAAAATTTATCATTCAGTTAAAACATTAAAA
GAACCAATTAATTCAGAGATACCAATTGCAGTATTATTTTCAATTTTAGTTGGTATGGCA
ATTTTATGGCCATTTATAGTTTATTTATATAAGAGAAGTAAAAGAGATTCATTAGAGTAT
CAATCGATGGCAAGTGTTGAAAGAGAGAATAGAAAAAAAGAXXXXXXXXXXATCATTTTA
ACANATAAGTNAAANANATCNCGTTTAANACGTTGGANGGNTTGGTCAGTGGNANTANGT
GGNATNNCTGNTGGGTTGNGTGGGTTAANTNAAAANCAAGGTTGGNTACCAGTTAANAAN
AATNTTTGGTCNCCATNTTTCANTTTGNTGANGGNTGGGTTTGGGTTNTTTGTTTTAACC
GTAANGTTTATTTTGANTGAAANCAAAAAAATTTGGAANGGTTCNCCNTTCA
sequence update 2002.10.25
Translated Amino Acid sequence 
ecvpt*KLKMNKVILLFFLFITYSSNLLVQSQTLTNITKYPDTSQLQYDQSYLRICTNLF
EQIVNFNTTLSVEFVYDACYTCEYQNLVVLDSSSSKYIIMPSTFGYKFNISVLYNGKAQD
DILYLSFHETFGEYGIYDISVNISTVNVTKKIYHSVKTLKEPINSEIPIAVLFSILVGMA
ILWPFIVYLYKRSKRDSLEYQSMASVERENRKK---

---IILTXKXXXSRLXRWXXWSVXXXGXXXGLXGLXXXQGWXPVXXNXWSPXFXLXXXGF
GXFVLTVXFILXEXKKIWXGSPF
Translated Amino Acid sequence (All Frames) 
Frame A:
ecvpt*KLKMNKVILLFFLFITYSSNLLVQSQTLTNITKYPDTSQLQYDQSYLRICTNLF
EQIVNFNTTLSVEFVYDACYTCEYQNLVVLDSSSSKYIIMPSTFGYKFNISVLYNGKAQD
DILYLSFHETFGEYGIYDISVNISTVNVTKKIYHSVKTLKEPINSEIPIAVLFSILVGMA
ILWPFIVYLYKRSKRDSLEYQSMASVERENRKK---

---IILTXKXXXSRLXRWXXWSVXXXGXXXGLXGLXXXQGWXPVXXNXWSPXFXLXXXGF
GXFVLTVXFILXEXKKIWXGSPF

Frame B:
nvcphkn*r*iklyyysfyl*hivvif*fnrkl*qi*qniqihrnyntinht*eyvqifl
nklsiliqlyllnlfmmhvilvniki*lfwihqvqnillcqvrldinlilvyyimekhkm
iyyiyhfmkhlvnmvsmtlv*tflq*m*qkkfiiqlkh*knqliqryqlqyyfqf*lvwq
fyghl*fiyirevkeih*sinrwqvlkeriekk---

---sf*xisxxxxv*xvgxxgqwxxvxxlxgxvg*xkxkvgyqlxxxfgxhxsxx*xxgl
gxlf*p*xlf*xkxkkfgxvxxs

Frame C:
mcahikikde*syiiilfiyni***sfssianfnkynkisryiaitirsiilknmyksf*
tncqf*ynfic*icl*cmlyl*iskfscfgfikfkiyyyakyvwi*i*y*cii*wkstr*
yiifiis*niw*iwyl*h*ckhfyskcnkknlsfs*nikrtn*frdtncsiifnfswygn
fmaiyslfi*ek*krfirvsidgkc*kre*kkr---

---hfnx*vkxixfxtlxglvsgxxwxxxwvxwvxxkxrlxts*xxxlvxxfxfxxgwvw
vxcfnrxvyfx*xqknlexfxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB451 (VHB451Q) /CSM/VH/VHB4-C/VHB451Q.Seq.d/                       1205   0.0
AHN419 (AHN419Q) /CSM/AH/AHN4-A/AHN419Q.Seq.d/                       1189   0.0
VHN834 (VHN834Q) /CSM/VH/VHN8-B/VHN834Q.Seq.d/                       1162   0.0
CHO456 (CHO456Q) /CSM/CH/CHO4-C/CHO456Q.Seq.d/                       1150   0.0
VFF521 (VFF521Q) /CSM/VF/VFF5-A/VFF521Q.Seq.d/                       1146   0.0
VHL294 (VHL294Q) /CSM/VH/VHL2-D/VHL294Q.Seq.d/                       1132   0.0
VHD894 (VHD894Q) /CSM/VH/VHD8-D/VHD894Q.Seq.d/                       1112   0.0
VHD484 (VHD484Q) /CSM/VH/VHD4-D/VHD484Q.Seq.d/                       1035   0.0
VHD330 (VHD330Q) /CSM/VH/VHD3-B/VHD330Q.Seq.d/                       1027   0.0
AFJ832 (AFJ832Q) /CSM/AF/AFJ8-B/AFJ832Q.Seq.d/                        932   0.0
own update 2003. 1.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           44   0.001  15
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    34   0.004  12
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    36   0.010  11
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36   0.011  10
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.015  11
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    52   0.027  1
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    42   0.041  12
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    34   0.091  9
AX356494|AX356494.1 Sequence 128 from Patent WO0181622.            36   0.096  7
AX347027|AX347027.1 Sequence 2098 from Patent WO0200928.           36   0.096  7
dna update 2007. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX663512_2(BX663512|pid:none) Zebrafish DNA sequence from clone ...    45   0.003
CP000721_4155(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    45   0.003
AK159649_1(AK159649|pid:none) Mus musculus osteoclast-like cell ...    43   0.012
AK035264_1(AK035264|pid:none) Mus musculus adult male urinary bl...    43   0.012
CR931713_13(CR931713|pid:none) Streptococcus pneumoniae strain 6...    42   0.036
BC135091_1(BC135091|pid:none) Danio rerio cDNA clone IMAGE:72249...    41   0.062
CR749838_1(CR749838|pid:none) Homo sapiens mRNA; cDNA DKFZp686G2...    40   0.11
AK057293_1(AK057293|pid:none) Homo sapiens cDNA FLJ32731 fis, cl...    40   0.11
AF211135_3(AF211135|pid:none) Carsonella ruddii natural-host Cte...    37   1.2
EU952077_1(EU952077|pid:none) Zea mays clone 1156805 von Willebr...    36   1.5
protein update 2009. 2.23
PSORT 

 psg: 1.02  gvh: 0.59  alm: 0.21  top: 0.20  tms: 0.20  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 32.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VHB451 is mit
5' end seq. ID VHB451F
5' end seq. 
>VHB451F.Seq
GAATGTGTGCCCACATAAAAATTAAAGATGAATAAAGTTATATTATTATTCTTTTTATTT
ATAACATATAGTAGTAATCTTTTAGTTCAATCGCAAACTTTAACAAATATAACAAAATAT
CCAGATACATCGCAATTACAATACGATCAATCATACTTAAGAATATGTACAAATCTTTTT
GAACAAATTGTCAATTTTAATACAACTTTATCTGTTGAATTTGTTTATGATGCATGTTAT
ACTTGTGAATATCAAAATTTAGTTGTTTTGGATTCATCAAGTTCAAAATATATTATTATG
CCAAGTACGTTTGGATATAAATTTAATATTAGTGTATTATATAATGGAAAAGCACAAGAT
GATATATTATATTTATCATTTCATGAAACATTTGGTGAATATGGTATCTATGACATTAGT
GTAAACATTTCTACAGTAAATGTAACAAAAAAAATTTATCATTCAGTTAAAACATTAAAA
GAACCAATTAATTCAGAGATACCAATTGCAGTATTATTTTCAATTTTAGTTGGTATGGCA
ATTTTATGGCCATTTATAGTTTATTTATATAAGAGAAGTAAAAGAGATTCATTAGAGTAT
CAATCGATGGCAAGTGTTGAAAGAGAGAATAGAAAAAAAGANNNNNNNNNN
Length of 5' end seq. 651
3' end seq. ID VHB451Z
3' end seq. 
>VHB451Z.Seq
NNNNNNNNNNATCATTTTAACANATAAGTNAAANANATCNCGTTTAANACGTTGGANGGN
TTGGTCAGTGGNANTANGTGGNATNNCTGNTGGGTTGNGTGGGTTAANTNAAAANCAAGG
TTGGNTACCAGTTAANAANAATNTTTGGTCNCCATNTTTCANTTTGNTGANGGNTGGGTT
TGGGTTNTTTGTTTTAACCGTAANGTTTATTTTGANTGAAANCAAAAAAATTTGGAANGG
TTCNCCNTTCA
Length of 3' end seq. 251
Connected seq. ID VHB451P
Connected seq. 
>VHB451P.Seq
GAATGTGTGCCCACATAAAAATTAAAGATGAATAAAGTTATATTATTATTCTTTTTATTT
ATAACATATAGTAGTAATCTTTTAGTTCAATCGCAAACTTTAACAAATATAACAAAATAT
CCAGATACATCGCAATTACAATACGATCAATCATACTTAAGAATATGTACAAATCTTTTT
GAACAAATTGTCAATTTTAATACAACTTTATCTGTTGAATTTGTTTATGATGCATGTTAT
ACTTGTGAATATCAAAATTTAGTTGTTTTGGATTCATCAAGTTCAAAATATATTATTATG
CCAAGTACGTTTGGATATAAATTTAATATTAGTGTATTATATAATGGAAAAGCACAAGAT
GATATATTATATTTATCATTTCATGAAACATTTGGTGAATATGGTATCTATGACATTAGT
GTAAACATTTCTACAGTAAATGTAACAAAAAAAATTTATCATTCAGTTAAAACATTAAAA
GAACCAATTAATTCAGAGATACCAATTGCAGTATTATTTTCAATTTTAGTTGGTATGGCA
ATTTTATGGCCATTTATAGTTTATTTATATAAGAGAAGTAAAAGAGATTCATTAGAGTAT
CAATCGATGGCAAGTGTTGAAAGAGAGAATAGAAAAAAAGA----------ATCATTTTA
ACANATAAGTNAAANANATCNCGTTTAANACGTTGGANGGNTTGGTCAGTGGNANTANGT
GGNATNNCTGNTGGGTTGNGTGGGTTAANTNAAAANCAAGGTTGGNTACCAGTTAANAAN
AATNTTTGGTCNCCATNTTTCANTTTGNTGANGGNTGGGTTTGGGTTNTTTGTTTTAACC
GTAANGTTTATTTTGANTGAAANCAAAAAAATTTGGAANGGTTCNCCNTTCA
Length of connected seq. 882
Full length Seq ID -
Full length Seq. -
Length of full length seq. -