VHB447
Library VH
(Link to library)
Clone ID VHB447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16299-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB447 (VHB447Q) /CSM/VH/VHB4-B/VHB447Q.Seq.d/
XXXXXXXXXXTATGAAAGAGCTGGTCGTGTATCATGTATTGGTCATCCAACTCGTATTGG
TTCAGTTACAATTGTCGGTGCAGTCTCTCCCCCAAGTGGAGATTTTGCTGATCCAGTCAC
TGCTGCCACTTTAGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACG
TAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGA
TACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAAT
TCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGG
TGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACA
AAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAA
GAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAA
TAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTC
AATGAAATTCCAAGATCCAACTNACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCT
CAATGAAGATATCATTA
sequence update 2002. 9.10
Translated Amino Acid sequence
---ERAGRVSCIGHPTRIGSVTIVGAVSPPSGDFADPVTAATLGIVQVFWGLDKKLAQRK
HFPSINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGE
SEKITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNK
VTWNQIKNELKEIIHRITSMKFQDPTXGEQTLTAHFSTLNEDII


Translated Amino Acid sequence (All Frames)
Frame A:
---mkelvvyhvlviqlvlvqlqlsvqslpqveilliqsllpl*vsskysgv*ikn*hnv
nishpsig*flspnickllilimikwiqnsfhsvpeprkffkwkkislkssnwsvkil*v
nlkrlplkslvlfvmisfnkmvslhtinvvhssrpfgc*ri**lsti*hkkllnqvplii
kllgiklkmn*kksftellq*nskiqltvnkl*llisqlsmkisl


Frame B:
---*kswscimywssnsywfsyncrcslspkwrfc*sshcchfryrpsilgfr*kistt*
tfpihqlvnfflqiyass*ysl*sngsrirstpyqsqgnssngrrsl*nrpigrsrffr*
i*kdyh*srsyys**fpstkwflsir*mlsilqdrldvkeyddflqfstksc*ikyr***
sylesn*k*ikrnhsqnyfneiprsnxr*tnfncsflnsq*ryh


Frame C:
---ERAGRVSCIGHPTRIGSVTIVGAVSPPSGDFADPVTAATLGIVQVFWGLDKKLAQRK
HFPSINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGE
SEKITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNK
VTWNQIKNELKEIIHRITSMKFQDPTXGEQTLTAHFSTLNEDII


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB447 (VHB447Q) /CSM/VH/VHB4-B/VHB447Q.Seq.d/ 1316 0.0
VHN460 (VHN460Q) /CSM/VH/VHN4-C/VHN460Q.Seq.d/ 1308 0.0
VHP385 (VHP385Q) /CSM/VH/VHP3-D/VHP385Q.Seq.d/ 1302 0.0
VHL626 (VHL626Q) /CSM/VH/VHL6-B/VHL626Q.Seq.d/ 1302 0.0
VHB101 (VHB101Q) /CSM/VH/VHB1-A/VHB101Q.Seq.d/ 1302 0.0
SLE162 (SLE162Q) /CSM/SL/SLE1-C/SLE162Q.Seq.d/ 1300 0.0
VHP748 (VHP748Q) /CSM/VH/VHP7-B/VHP748Q.Seq.d/ 1298 0.0
VHN664 (VHN664Q) /CSM/VH/VHN6-C/VHN664Q.Seq.d/ 1294 0.0
VFL661 (VFL661Q) /CSM/VF/VFL6-C/VFL661Q.Seq.d/ 1287 0.0
VFK876 (VFK876Q) /CSM/VF/VFK8-D/VFK876Q.Seq.d/ 1287 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB093509|AB093509.1 Saccharomyces exiguus VMA1-1 gene for vacuolar membrane ATPase subunit a precursor 1, partial cds, strain:IFO1128. 74 4e-11 2
AB093510|AB093510.1 Saccharomyces exiguus VMA1-2 gene for vacuolar membrane ATPase subunit a precursor 2, partial cds, strain:IFO1128. 74 4e-11 2
AB093511|AB093511.1 Saccharomyces unisporus VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO0316. 74 1e-10 1
AB093507|AB093507.1 Saccharomyces castellii VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO1992. 66 2e-09 2
AB093508|AB093508.1 Saccharomyces dairenensis VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO0211. 64 3e-08 2
AB093506|AB093506.1 Kluyveromyces lactis VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO1267. 40 1e-04 3
AB093505|AB093505.1 Candida glabrata VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds. 54 1e-04 1
AB093512|AB093512.1 Saccharomyces pastorianus VMA1 gene for vacuolar membrane ATPase subunit a, partial cds, strain:IFO11024. 38 5e-04 3
AB093514|AB093514.1 Saccharomyces pastorianus VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO11023. 38 6e-04 3
AC084163|AC084163.4 Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence. 42 0.025 4
dna update 2007. 4. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;... 447 e-124
A56807(A56807) H+-transporting two-sector ATPase (EC 3.6.3.14), ... 314 1e-84
(P38607) Vacuolar ATP synthase catalytic subunit A, osteoclast i... 314 2e-84
I50715(I50715) A2 isoform of vacuolar H+-ATPase subunit A - chic... 312 7e-84
(Q90647) RecName: Full=V-type proton ATPase catalytic subunit A;... 312 7e-84
AX407287_1(AX407287|pid:none) Sequence 58 from Patent WO0226984. 311 9e-84
(P31404) RecName: Full=V-type proton ATPase catalytic subunit A;... 311 1e-83
M80430_1(M80430|pid:none) Bovine vacuolar H+-ATPase A subunit mR... 311 1e-83
BC105145_1(BC105145|pid:none) Bos taurus ATPase, H+ transporting... 311 1e-83
BC055130_1(BC055130|pid:none) Danio rerio ATPase, H+ transportin... 310 2e-83
protein update 2009. 6.27
PSORT

psg: 0.83 gvh: 0.40 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VHB447 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB447Z
3' end seq.
>VHB447Z.Seq
NNNNNNNNNNTATGAAAGAGCTGGTCGTGTATCATGTATTGGTCATCCAACTCGTATTGG
TTCAGTTACAATTGTCGGTGCAGTCTCTCCCCCAAGTGGAGATTTTGCTGATCCAGTCAC
TGCTGCCACTTTAGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACG
TAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGA
TACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAAT
TCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGG
TGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACA
AAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAA
GAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAA
TAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTC
AATGAAATTCCAAGATCCAACTNACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCT
CAATGAAGATATCATTA
Length of 3' end seq. 677
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -